Jatropha Genome Database

JcCB0318551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0318551.10 - phase: 0 /partial
         (233 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029978001 assembled CDS                                       385   e-108
GSVIVT01027922001 assembled CDS                                       379   e-106

>GSVIVT01029978001 assembled CDS
          Length = 528

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/217 (83%), Positives = 194/217 (89%)

Query: 17  QKDLGRXXXXXXXXXXXIPKCRKSISKKIVSVMAPQQSERRPATTGSVKTAMTMTEKILA 76
           +KD+G            +PK ++  S+KIVSVMAPQQS R P+TTGSVKTAMTMTEKILA
Sbjct: 15  KKDVGLSAFSSSPSSFSVPKTKRRNSRKIVSVMAPQQSPRSPSTTGSVKTAMTMTEKILA 74

Query: 77  KASEKPQLSPGENVWVNVDVLMTHDVCGPGSIGIFKKEFGANAKVWDREKIVIIPDHYIF 136
           +AS+KPQLSPGENVWV+VD+LMTHDVCGPGS GIFKKEFG NAKVWDREKIVIIPDHYIF
Sbjct: 75  RASQKPQLSPGENVWVDVDILMTHDVCGPGSFGIFKKEFGQNAKVWDREKIVIIPDHYIF 134

Query: 137 TADERANRNVDILRDFCYEQNIKYFYDIKDLSNFKANPDYKGVCHVALAQEGHCRPGEVL 196
           T DERANRNVDILRDFC EQNIKYFYDIKDL NFK NPDYKGVCHVALAQEGHCRPGEVL
Sbjct: 135 TNDERANRNVDILRDFCTEQNIKYFYDIKDLGNFKVNPDYKGVCHVALAQEGHCRPGEVL 194

Query: 197 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLK 233
           LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLK
Sbjct: 195 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLK 231


>GSVIVT01027922001 assembled CDS
          Length = 508

 Score =  379 bits (973), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/200 (89%), Positives = 187/200 (93%)

Query: 34  IPKCRKSISKKIVSVMAPQQSERRPATTGSVKTAMTMTEKILAKASEKPQLSPGENVWVN 93
           I K  K  S+KIVSVMAPQQS R P+T+GSVKTAMTMTEKILA+ASEKPQLSPGENVWVN
Sbjct: 32  IQKTNKRNSRKIVSVMAPQQSPRSPSTSGSVKTAMTMTEKILARASEKPQLSPGENVWVN 91

Query: 94  VDVLMTHDVCGPGSIGIFKKEFGANAKVWDREKIVIIPDHYIFTADERANRNVDILRDFC 153
           VD+LMTHDVCGPGS GIFKKEFG NAKVWDREKIVIIP+HYIFT DERANRNVDILR+FC
Sbjct: 92  VDLLMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPEHYIFTKDERANRNVDILREFC 151

Query: 154 YEQNIKYFYDIKDLSNFKANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA 213
            EQNIKYFYDIKDL NF+ANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA
Sbjct: 152 TEQNIKYFYDIKDLGNFRANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA 211

Query: 214 TGIGNTDAGFVLGTGKLLLK 233
           TGIGNTDA FVLGTGK+LLK
Sbjct: 212 TGIGNTDAAFVLGTGKILLK 231