Jatropha Genome Database

JcCB0317901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317901.10 - phase: 0 /partial
         (280 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009879001 assembled CDS                                       431   e-121
GSVIVT01024465001 assembled CDS                                       283   9e-77
GSVIVT01021865001 assembled CDS                                       282   1e-76
GSVIVT01036052001 assembled CDS                                       140   7e-34

>GSVIVT01009879001 assembled CDS
          Length = 870

 Score =  431 bits (1108), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/274 (77%), Positives = 227/274 (82%), Gaps = 2/274 (0%)

Query: 7   PVARFHGSRLASAPSLSPFQ-HSLESSSDGKGSFVWAKKVARTSSSASVGAAIVEAENSL 65
           PV+R+HGSRLASAP+ SP+Q H ++S   G  S    +KVAR SS A+VGAAIVEAEN L
Sbjct: 443 PVSRYHGSRLASAPTPSPYQQHEIKSKQSGT-SGSQGRKVARFSSGATVGAAIVEAENDL 501

Query: 66  EIEAHXXXXXXXXXXXXXXXXXSDVFNSKNPEEDKVKLGEPGWKERYYEEKFYVKTLEEL 125
           E E H                 SD+FNSKNPEEDKVKLGE GWKERYYEEKF  KT EE 
Sbjct: 502 ETELHDNKDELKAKLKELLREKSDLFNSKNPEEDKVKLGEAGWKERYYEEKFSTKTPEEQ 561

Query: 126 EDIRRDVALRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKNLDQMNIEFELGSPF 185
           E +R DV L+YTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLK+L Q+NI FELGSPF
Sbjct: 562 EAMRNDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPF 621

Query: 186 KPFNQLLGVFPAASSHALPVNYRKLMTDPNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPF 245
           KPFNQLLGVFPAASSHALP  YRKLMTDPNSPIIDFYPTDFEVDMNGKR+AWQGIAKLPF
Sbjct: 622 KPFNQLLGVFPAASSHALPEEYRKLMTDPNSPIIDFYPTDFEVDMNGKRFAWQGIAKLPF 681

Query: 246 IDEARLLAEVKKIEHTLTEEEARRNSVMFDMLFV 279
           IDEARLLAEV+KIEHTLTEEE RRNSVMFDMLFV
Sbjct: 682 IDEARLLAEVQKIEHTLTEEEFRRNSVMFDMLFV 715


>GSVIVT01024465001 assembled CDS
          Length = 845

 Score =  283 bits (723), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 148/181 (81%)

Query: 99  DKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCSWQWFY 158
           DK+KLGE GWKER+Y EKF  KT ++ E +RR   L+Y EG+CWVMHYYY+GVCSWQWFY
Sbjct: 463 DKIKLGEDGWKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGVCSWQWFY 522

Query: 159 PYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTDPNSPI 218
           PYHYAPFASD+  LDQ++I+F LG PFKPF+QL+GV PAAS+HALP+ YRKLM D  SPI
Sbjct: 523 PYHYAPFASDIYGLDQLDIQFTLGKPFKPFDQLMGVLPAASAHALPLYYRKLMMDETSPI 582

Query: 219 IDFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSVMFDMLF 278
           +DFYP DFE+DMNGKRY WQ I KLPFI E+RLLAE+ K+E TLT++E  RN +  D LF
Sbjct: 583 LDFYPADFELDMNGKRYPWQAICKLPFIKESRLLAEIAKVESTLTDKEKLRNRLGMDALF 642

Query: 279 V 279
           +
Sbjct: 643 I 643


>GSVIVT01021865001 assembled CDS
          Length = 1083

 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 153/180 (85%)

Query: 100 KVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCSWQWFYP 159
           +VKLGEPG+KERYY EKF +   EE++ +R+++ ++Y EGLCWV  YYY+GVCSWQW+YP
Sbjct: 670 QVKLGEPGYKERYYTEKFNLSNPEEIDKVRKEIVMKYVEGLCWVCRYYYQGVCSWQWYYP 729

Query: 160 YHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTDPNSPII 219
           +HYAPFASDLK+L  + I F LG PFKPF+QL+G  PAAS+ +LP NYRKLMTD +SPI+
Sbjct: 730 FHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASASSLPENYRKLMTDQSSPIL 789

Query: 220 DFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSVMFDMLFV 279
           DFYP+DFE+DMNGKRYAWQG+AKLPFIDE +LLAE KK+E TLT EE  RNSVMFD+L+V
Sbjct: 790 DFYPSDFEIDMNGKRYAWQGVAKLPFIDEEKLLAETKKLEVTLTVEEQVRNSVMFDLLYV 849


>GSVIVT01036052001 assembled CDS
          Length = 525

 Score =  140 bits (353), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 81/111 (72%)

Query: 88  SDVFNSKNPEEDKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYY 147
           SD++ S +   D+V+LG PGWKERYY+EK    T + +E  R+++  +YTEGL WV+ YY
Sbjct: 414 SDLWRSGSLGIDRVRLGHPGWKERYYKEKCSCDTSQGIESTRKELVQKYTEGLLWVLQYY 473

Query: 148 YEGVCSWQWFYPYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAA 198
           + GV SW WFYPYHY PFASD K L ++  +FE GSPFKPF+QL+GV P +
Sbjct: 474 FSGVPSWTWFYPYHYGPFASDFKGLSRVKGKFERGSPFKPFDQLMGVLPPS 524