Jatropha Genome Database

JcCB0317451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317451.20 - phase: 0 /partial
         (73 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019608001 assembled CDS                                        89   5e-19

>GSVIVT01019608001 assembled CDS
          Length = 724

 Score = 88.6 bits (218), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 1   RHKMTVLTPSYQAESYAPDDNRSDLRQFLYNTRWFRQFQKIDELASELDS 50
           RHKMTVLTP+Y AESY+P+DNR DLRQFLYN RW  QF+KID+L SELD+
Sbjct: 647 RHKMTVLTPAYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDQLVSELDA 696