Jatropha Genome Database

JcCB0317451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317451.10 - phase: 0 /partial
         (278 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019608001 assembled CDS                                       512   e-146

>GSVIVT01019608001 assembled CDS
          Length = 724

 Score =  512 bits (1318), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 236/277 (85%), Positives = 257/277 (92%)

Query: 1   MRLLKVATCNLNQWAMDFDCNLKNIKESISKAKQAGAVIRLGPELEITGYGCEDHFLELD 60
           MRLLKVATCNLNQWAMDFD NLKNIKESI +AK+AGAVIRLGPELE+TGYGCEDHFLELD
Sbjct: 1   MRLLKVATCNLNQWAMDFDGNLKNIKESICRAKEAGAVIRLGPELEVTGYGCEDHFLELD 60

Query: 61  TVTHAWECLKEILLGDWTDGLLCSFGMPVIKGSERYNCQVLCFNRKILMIRPKMWLANDG 120
           T+THAWECLKEIL+GDWTDG+ CS GMPVIK S RYNCQVLC NRKI+MIRPKMWLAN+G
Sbjct: 61  TITHAWECLKEILVGDWTDGIFCSIGMPVIKESARYNCQVLCLNRKIVMIRPKMWLANNG 120

Query: 121 NYRELRWFTAWKQKDQLVDFQLPIEISKAINQDSVPFGYGFIQFLDTAVAAEVCEELFTP 180
           NYRELRWFT WKQKD+L DFQLP EI++A++Q SVPFGYG+++FLDTAVA E CEELFT 
Sbjct: 121 NYRELRWFTTWKQKDELEDFQLPSEIAEALSQKSVPFGYGYVRFLDTAVAVETCEELFTA 180

Query: 181 IPPHAELALNGVEVFMNASGSHHQLRKLDLRIRAFIGATHTRGGVYMYSNQQGCDGARLY 240
           + PHAEL LNGVEVFMNASGSHHQLRKLDLR++AFIGATHT GGVYMYSNQQGCDG RLY
Sbjct: 181 MAPHAELQLNGVEVFMNASGSHHQLRKLDLRVQAFIGATHTIGGVYMYSNQQGCDGGRLY 240

Query: 241 YDGCSCIAVNGEVVAQGSQFSLRDVEVVVAQVDLDAV 277
           YDGCSCI VNG +VAQGSQFSL+DVEVVVAQVDLDAV
Sbjct: 241 YDGCSCIVVNGNMVAQGSQFSLKDVEVVVAQVDLDAV 277