Jatropha Genome Database

JcCB0317401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317401.10 + phase: 0 
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000981001 assembled CDS                                       111   7e-26
GSVIVT01033859001 assembled CDS                                       108   5e-25

>GSVIVT01000981001 assembled CDS
          Length = 161

 Score =  111 bits (277), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 1/95 (1%)

Query: 1   METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
           M+TSSPA+FVN E L+ Y G+KVRAVVQVI  DGG    KS D+ + I+K  P PSVP++
Sbjct: 55  MDTSSPAVFVNAELLRTYVGRKVRAVVQVIGFDGGVVTGKSVDDQQLIIKGSP-PSVPVM 113

Query: 61  NYIEVIGVAETNKSIRAELCTDFGNTFGMNYWPAL 95
           NYIEVIG+A++N+SIRAE+ T+FG+TF  + +  L
Sbjct: 114 NYIEVIGIADSNQSIRAEIWTNFGSTFDTHSYNQL 148


>GSVIVT01033859001 assembled CDS
          Length = 107

 Score =  108 bits (270), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 70/87 (80%), Gaps = 1/87 (1%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+TS+PA+FVN E L+MY G+KVRAV+QVI  +GG  I KSTDE + ++K  P PS PL 
Sbjct: 1  MDTSNPAVFVNMELLRMYVGRKVRAVIQVIRSEGGVIIGKSTDEQQLVIKGTP-PSFPLT 59

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTF 87
           ++EVIG+A++N+SIRAE+ T+FG+TF
Sbjct: 60 TFVEVIGIADSNQSIRAEIWTNFGDTF 86