Jatropha Genome Database

JcCB0317061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317061.10 - phase: 0 /partial
         (192 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008799001 assembled CDS                                       309   6e-85

>GSVIVT01008799001 assembled CDS
          Length = 644

 Score =  309 bits (791), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 170/192 (88%), Gaps = 1/192 (0%)

Query: 1   LILELGPYIEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSARVGF 60
           LIL+LGPYI+EL KTGGAIKEFVNPKYKD+SKTSFKSSTRLECMMQDYPKTLPPSARVGF
Sbjct: 412 LILKLGPYIKELTKTGGAIKEFVNPKYKDSSKTSFKSSTRLECMMQDYPKTLPPSARVGF 471

Query: 61  TVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYRANSLILRKXXXXXXXX-XXX 119
           TVMD WLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYRANSLILRK            
Sbjct: 472 TVMDAWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYRANSLILRKAGGVQIDDPVQE 531

Query: 120 XFNGQEVEVWPRITWKPKWGLTFSDVKRKVSGSCSISQRSTMAIKGRNIFVEDLSLDGAL 179
            FNGQE+EVWPRITWKP WGLTFS++KRK+SGSCSISQRST+ IKG NIF+EDLSLDG L
Sbjct: 532 VFNGQEMEVWPRITWKPIWGLTFSEIKRKISGSCSISQRSTLVIKGCNIFLEDLSLDGTL 591

Query: 180 VIESVDGAEVCI 191
           V+ SV+ AEV +
Sbjct: 592 VVNSVEDAEVKV 603