Jatropha Genome Database

JcCB0316661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0316661.10 + phase: 0 /partial
         (55 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026648001 assembled CDS                                        76   3e-15

>GSVIVT01026648001 assembled CDS
          Length = 556

 Score = 75.9 bits (185), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)

Query: 3   FDSISSTSMPDAKLDYGDVLDSAIKLFEKMYPNEEFFPETVSPEDSENDVGLS 55
           F+SISSTSMPD  L+Y  +LD+ +KLF +MYP EEFFPET SPE+ E+D GLS
Sbjct: 501 FESISSTSMPDGNLNYNVLLDATVKLFHQMYPQEEFFPETTSPENVEDDDGLS 553