Jatropha Genome Database

JcCB0309911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0309911.10 + phase: 1 /partial
         (248 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011808001 assembled CDS                                       420   e-118
GSVIVT01008367001 assembled CDS                                       401   e-112

>GSVIVT01011808001 assembled CDS
          Length = 426

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/217 (90%), Positives = 210/217 (96%)

Query: 22  IWASGVLNPESSASGDMETSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMA 81
           IWASG L+PES +SG++ TSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMA
Sbjct: 55  IWASGALDPESRSSGNLVTSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMA 114

Query: 82  VVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYMPENPTSRFKNVYDT 141
           V+YLV LTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIY+PENPTSRFKNVY+T
Sbjct: 115 VIYLVCLTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVPENPTSRFKNVYET 174

Query: 142 LFDEFVLAHIFGWWGKAILLRNQPLLWVLSIGFEFLEFTFRHMLPNFNECWWDSIILDIL 201
           LFDEFV+AHIFGWWGKAI++RNQPLLWVLSIGFE +E TFRHMLPNFNECWWDSIILDIL
Sbjct: 175 LFDEFVVAHIFGWWGKAIMIRNQPLLWVLSIGFELMELTFRHMLPNFNECWWDSIILDIL 234

Query: 202 ICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKA 238
           +CNWFGIWAGMHTVRYFDG+TYEWVGISRQPNIIGK 
Sbjct: 235 VCNWFGIWAGMHTVRYFDGRTYEWVGISRQPNIIGKV 271


>GSVIVT01008367001 assembled CDS
          Length = 430

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 185/221 (83%), Positives = 210/221 (95%), Gaps = 2/221 (0%)

Query: 20  TC--IWASGVLNPESSASGDMETSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLV 77
           TC  IWASG L+P++++SGD+ TSVKRG++AMIAVFLAY LLQAP+TVLIRPHPAIWRLV
Sbjct: 55  TCFLIWASGALDPDNTSSGDLVTSVKRGIFAMIAVFLAYSLLQAPATVLIRPHPAIWRLV 114

Query: 78  HGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYMPENPTSRFKN 137
           HG+AVVYL++LTFLLFQKRDDARQFM+FLHP+LGVELPERSYG+DCRIY+PENP+SRFKN
Sbjct: 115 HGLAVVYLISLTFLLFQKRDDARQFMRFLHPNLGVELPERSYGSDCRIYVPENPSSRFKN 174

Query: 138 VYDTLFDEFVLAHIFGWWGKAILLRNQPLLWVLSIGFEFLEFTFRHMLPNFNECWWDSII 197
           VY+TLFDEFVLAHIFGWWGKAI++RNQPLLWVLS GFE +E TFRHMLPNFNECWWDSI+
Sbjct: 175 VYETLFDEFVLAHIFGWWGKAIMIRNQPLLWVLSFGFELMELTFRHMLPNFNECWWDSIV 234

Query: 198 LDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKA 238
           LD+L+CNWFGIWAGM TVRYFDG+TYEWVGISRQPNII K 
Sbjct: 235 LDVLVCNWFGIWAGMRTVRYFDGRTYEWVGISRQPNIISKV 275