Jatropha Genome Database

JcCB0309871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0309871.10 + phase: 0 /pseudo
         (449 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036171001 assembled CDS                                       320   9e-88
GSVIVT01036173001 assembled CDS                                       307   7e-84
GSVIVT01033433001 assembled CDS                                       181   9e-46
GSVIVT01013560001 assembled CDS                                       167   1e-41
GSVIVT01013561001 assembled CDS                                       165   5e-41
GSVIVT01013562001 assembled CDS                                        72   4e-13
GSVIVT01001346001 assembled CDS                                        72   6e-13
GSVIVT01036175001 assembled CDS                                        53   3e-07

>GSVIVT01036171001 assembled CDS
          Length = 490

 Score =  320 bits (820), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 149/238 (62%), Positives = 194/238 (81%)

Query: 1   MELEKITQFLERKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYN 60
           MEL  I +FLE K++LVTGATGFLAK+F+E++LR QPNVKKL+LLLRA DT S  QR +N
Sbjct: 1   MELGSIVEFLENKSILVTGATGFLAKIFVERILRTQPNVKKLFLLLRAGDTKSATQRLHN 60

Query: 61  EVMGKDLFRVVKEKLGANLNSFIAKKIAIVAGDVSYEDLGVKDSSLREEMINDLDFILNF 120
           EV+GK+LF V++EK  ++ NSF++KK+  V GD+S +DLGV DS+LREEM  ++D ++N 
Sbjct: 61  EVIGKELFWVLREKWASDFNSFVSKKLTPVPGDISCDDLGVTDSNLREEMWREVDIVVNL 120

Query: 121 AATTRFDERYDVALGTNTLGAKNVLCFAKNCLKLKLLIHVSTAYVCGESSGLIMEKPYQL 180
           AATT FDERYDVALG N LGA++VL FAK C+K+K+L+HVSTAYV GE SGLI+E+P+Q+
Sbjct: 121 AATTNFDERYDVALGINALGARHVLDFAKKCVKIKMLLHVSTAYVAGEQSGLILEQPFQM 180

Query: 181 GEALNGVLGLNIVEEKKLIDRKLNQLQREGATEANIKKAMIDMGIERAKTYGWPNTYI 238
           GE LNG  GL+I EEKKL++ +L++LQ EGAT   +  AM D GI+RAK +GWPNTY+
Sbjct: 181 GETLNGTFGLDIEEEKKLMEERLDELQSEGATREAVTLAMKDFGIQRAKMHGWPNTYV 238



 Score =  158 bits (399), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 99/135 (73%)

Query: 315 YFTSKPWILQNGKPVKVAKPTILTTMANFDRYIAIRYLPWLKVLKLANKISCDYFQGTYN 374
           YFT  PWI ++GK VKV K T+L+TM +F RY+A+RYL  LK L+  N   C YF+GTY 
Sbjct: 356 YFTKNPWINKDGKAVKVGKVTVLSTMDSFHRYMALRYLLLLKGLQFVNTAFCQYFRGTYT 415

Query: 375 NLNRKIKRVMRLVELYQPYLFFHGIFDDSNTNKLLRTAKDNGMETNNFFFDVKSIDWDDY 434
           +LNR+IK ++RL+ELY+PYLFF G+FDD NT KL      +G E + F+FD K IDW+DY
Sbjct: 416 DLNRRIKFLLRLIELYKPYLFFKGVFDDMNTEKLRMAVTASGAEADLFYFDPKCIDWEDY 475

Query: 435 FINTHIPGIVKYVLK 449
           F+N HIPG VKYV K
Sbjct: 476 FMNIHIPGAVKYVFK 490


>GSVIVT01036173001 assembled CDS
          Length = 490

 Score =  307 bits (786), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 193/238 (81%)

Query: 1   MELEKITQFLERKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYN 60
           MEL  I +FLE K++LVTGATGFLAK+F+EK+LR+QPNVKKL+LLLRAADT S  QR +N
Sbjct: 1   MELGSIVEFLENKSILVTGATGFLAKIFVEKILRIQPNVKKLFLLLRAADTKSATQRLHN 60

Query: 61  EVMGKDLFRVVKEKLGANLNSFIAKKIAIVAGDVSYEDLGVKDSSLREEMINDLDFILNF 120
           EV+GK+LFRV+K+K G+NLNSFI++K+  + GD+S E+LGV + +LREE+  ++D ILN 
Sbjct: 61  EVLGKELFRVLKDKWGSNLNSFISEKVTPIPGDISCENLGVTNLNLREEIWREVDVILNL 120

Query: 121 AATTRFDERYDVALGTNTLGAKNVLCFAKNCLKLKLLIHVSTAYVCGESSGLIMEKPYQL 180
           AATT+FDERYDVALG NTLGA +VL F+K C+KLK+L+HVSTAYV GE  GLI+E P ++
Sbjct: 121 AATTKFDERYDVALGINTLGASHVLNFSKKCVKLKMLLHVSTAYVSGEREGLILESPLKM 180

Query: 181 GEALNGVLGLNIVEEKKLIDRKLNQLQREGATEANIKKAMIDMGIERAKTYGWPNTYI 238
           G+ALNG  GL++ +EKKL++  LN+L    ATE  I   M ++G++RA  YGWPNTY+
Sbjct: 181 GKALNGASGLDVDKEKKLVEEGLNELNELQATEETISLTMKELGMKRALMYGWPNTYV 238



 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 93/135 (68%)

Query: 315 YFTSKPWILQNGKPVKVAKPTILTTMANFDRYIAIRYLPWLKVLKLANKISCDYFQGTYN 374
           YF   PWI ++GK VKV+K  + +T   F  Y+A+RY+  LKVL+  N + C    G   
Sbjct: 356 YFHENPWINKDGKAVKVSKLILFSTTFVFHGYLAVRYMLPLKVLQFLNFLLCQILCGMCT 415

Query: 375 NLNRKIKRVMRLVELYQPYLFFHGIFDDSNTNKLLRTAKDNGMETNNFFFDVKSIDWDDY 434
           + NRKIK +M LVELY+PYLFF GIFDD NT+KL   A ++  + + F+FD K IDW+DY
Sbjct: 416 DHNRKIKMLMYLVELYKPYLFFKGIFDDLNTDKLRLAATESSSKADLFYFDPKCIDWEDY 475

Query: 435 FINTHIPGIVKYVLK 449
           FIN HIPG++KYVLK
Sbjct: 476 FINIHIPGVLKYVLK 490


>GSVIVT01033433001 assembled CDS
          Length = 632

 Score =  181 bits (458), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 149/239 (62%), Gaps = 7/239 (2%)

Query: 6   ITQFLERKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYNEVMGK 65
           I  FL  K+ L+TGATGFLAKV +EK+LR +P+V K+YLL++A +  +  +R  NE++  
Sbjct: 146 IDNFLRGKSFLITGATGFLAKVLIEKILRTEPDVGKIYLLIKAKNQEAAMERLKNEIINA 205

Query: 66  DLFRVVKEKLGANLNSFIAKKIAIVAGDVSYEDLGVKDSSLREEMINDLDFILNFAATTR 125
           ++F  +++  G +  +F+  K+  VAGDV    LG+ +    E +  ++D I+N AA T 
Sbjct: 206 EVFDCLQQAYGKSYQAFMLSKLVPVAGDVCGSSLGL-EKDFAEAIAKEVDVIVNSAANTT 264

Query: 126 FDERYDVALGTNTLGAKNVLCFAKNCLKLKLLIHVSTAYVCGESSGLIMEKPYQLGEALN 185
           FDERYD+A+  NT G  +++ FAKNC KLKL + VSTAYV G+  G IMEKP+ +G+++ 
Sbjct: 265 FDERYDIAIDINTKGPCHLMNFAKNCKKLKLFLQVSTAYVNGQRQGRIMEKPFCIGDSIA 324

Query: 186 GVLGLNIVEEKKL------IDRKLNQLQREGATEANIKKAMIDMGIERAKTYGWPNTYI 238
               ++    + L       + KL    +E    + + + M ++G+ERAK +GW +TY+
Sbjct: 325 RESNISEAPPRLLPTLNIEAEIKLALDSKEAFKGSTLAQKMKELGLERAKKHGWQDTYV 383



 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 9/136 (6%)

Query: 315 YFTSKPWILQNGKPVKVAKPTILTTMANFDRYIAIRYLPWLKVLKLANKISCDYFQGTY- 373
           +F S P +   G P+ V    + +++ +F  ++      W   +  +   +     G   
Sbjct: 503 HFKSSPCLDNKGNPIHVPIMKLFSSIEDFSSHL------WRDAILRSGLSAMPSQTGKLL 556

Query: 374 NNLNRKIKRVMRLVELYQPYLFFHGIFDDSNTNKLLRTAKDNGMETNNFFFDVKSIDWDD 433
             L + +K+   L ++YQPY F+ G FD+SNT +L+    +   E + F FDV SIDW D
Sbjct: 557 RKLEKTVKQAKYLADIYQPYTFYGGRFDNSNTQRLMDCMCEE--EKSKFGFDVGSIDWKD 614

Query: 434 YFINTHIPGIVKYVLK 449
           Y  N HIPG+ ++V+K
Sbjct: 615 YISNVHIPGLRRHVMK 630


>GSVIVT01013560001 assembled CDS
          Length = 571

 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/246 (38%), Positives = 149/246 (60%), Gaps = 22/246 (8%)

Query: 6   ITQFLERKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYNEVMGK 65
           I QFL  KT  +TGATG LAK  +EK+LR  P+V K+++L++A +  +   R   E++  
Sbjct: 90  ILQFLAGKTYFITGATGLLAKAVVEKILRRAPDVGKIFILIKAKNKEAAVDRLKTEIINS 149

Query: 66  DLFRVVKEKLGANLNSFIAKKIAIVAGDVSYEDLGVKDSSLREEMINDLDFILNFAATTR 125
           +LF  +K++ G     F+  K+A V G++   DLG+ D++L  E+  ++D I+N AA T 
Sbjct: 150 ELFECLKQRHGKYYQDFMLSKLAPVVGNLCESDLGI-DANLISEIAEEVDVIINSAANTN 208

Query: 126 FDERYDVALGTNTLGAKNVLCFAKN-CLKLKLLIHVSTAYVCGESSGLIMEKPYQLGEAL 184
           F+ERYDV+L  NT+G   ++ FAK  C  L++ +HVSTAYV GE  G+I EKP+ +GE++
Sbjct: 209 FEERYDVSLHANTIGPCRLMDFAKKYCKNLRVFLHVSTAYVNGEREGMITEKPFYMGESI 268

Query: 185 N-----------GVLGLNIVEEKKL-IDRKLNQLQREGATEANIK-KAMIDMGIERAKTY 231
                           L++ +E K+ +D K+       A E N++ + M ++G+ERA+ +
Sbjct: 269 AREKVASEFLPLSYPALDVDDEIKIALDSKV-------AFEGNLEDQKMKELGLERARIH 321

Query: 232 GWPNTY 237
           GW N Y
Sbjct: 322 GWHNPY 327


>GSVIVT01013561001 assembled CDS
          Length = 311

 Score =  165 bits (417), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/247 (38%), Positives = 146/247 (59%), Gaps = 15/247 (6%)

Query: 1   MELEKITQFLERKTVLVTGATGFLAKVFLEKLLRVQPNVKKLYLLLRAADTSSVNQRFYN 60
           M LE  + F E KT  +TG TGFLAK  +EK+LR  P+V K+++L++A +  +   R   
Sbjct: 1   MVLEFFSSFQE-KTYFITGGTGFLAKAVVEKILRTAPDVGKIFVLIKAKNKEAAMDRLKT 59

Query: 61  EVMGKDLFRVVKEKLGANLNSFIAKKIAIVAGDVSYEDLGVKDSSLREEMINDLDFILNF 120
           E++  +LF  +K++ G     FI  K+A V G++   DLG+  +S+  E+  ++D I+N 
Sbjct: 60  EIIDSELFECLKQRHGKYYQDFILSKLAPVVGNLCESDLGIDANSI-SEIAEEVDVIINS 118

Query: 121 AATTRFDERYDVALGTNTLGAKNVLCFA-KNCLKLKLLIHVSTAYVCGESSGLIMEKPYQ 179
           AA T F+ERYDV+L TN LG + ++ F  K C  L++ +HVSTAYV GE  G+IMEKP+ 
Sbjct: 119 AANTNFEERYDVSLSTNVLGPRRLMDFTNKYCKNLRVFLHVSTAYVSGEREGMIMEKPFH 178

Query: 180 LGEALN--------GVLGLNIVEEKKLIDRKLN-QLQREGATEANIKKAMIDMGIERAKT 230
           +GE +           L   +++    I+  L+ ++  EG  E    KA   +G+ERA+ 
Sbjct: 179 MGERIAREKAASEFPPLAYPVLDVDGEIEIALDSKVAFEGNLEDEKMKA---LGLERARI 235

Query: 231 YGWPNTY 237
           +GW N Y
Sbjct: 236 HGWHNPY 242


>GSVIVT01013562001 assembled CDS
          Length = 212

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 14/128 (10%)

Query: 326 GKPVKVAKPTILTTMANFDRYIAIRYLPWLKVLKLANKISCDYFQGTYNNLNRKIKRVMR 385
           GK V + +  I + M +F  ++    +   ++    NK S          L RK K ++ 
Sbjct: 89  GKTVDMKEMKIFSPMDDFSSHMQTEIVQQRRLTISGNKAS--------QRLERKCKMIVE 140

Query: 386 ----LVELYQPYLFFHGIFDDSNTNKLLRTAKDNGMETNNFFFDVKSIDWDDYFINTHIP 441
               L  +YQPY+FF G FD+SNT+ L+    +   E   F  DV+++DW+DY  N HI 
Sbjct: 141 HAINLARVYQPYMFFRGRFDNSNTHNLMEGMSEE--EMKRFRLDVENVDWEDYITNIHIS 198

Query: 442 GIVKYVLK 449
           G+ K+V+K
Sbjct: 199 GLKKHVMK 206


>GSVIVT01001346001 assembled CDS
          Length = 104

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 66  DLFRVVKEKLGANLNSFIAKKIAIVAGDVSYEDLGVKDSSLREEMINDLDFILNFAATTR 125
           +LF+ +++  G +   F+  K+  V GDV   +LG+ D++   E+   +D I+N AA T 
Sbjct: 7   ELFKCLEQMHGESYTDFMMSKLVSVIGDVCKSNLGM-DATSATEIAKAVDVIVNSAANTI 65

Query: 126 FDERYDVALGTNTLGAKNVLCFAKNCLKLKLLIHVSTA 163
            DERYDVAL TNT G   ++ FAK   K  L +HVST 
Sbjct: 66  LDERYDVALNTNTKGPSRLVSFAKKYKKPSLSVHVSTG 103


>GSVIVT01036175001 assembled CDS
          Length = 35

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/35 (62%), Positives = 30/35 (85%)

Query: 1  MELEKITQFLERKTVLVTGATGFLAKVFLEKLLRV 35
          MEL  + +FLE K++LVTGATGFLAK+F+E +LR+
Sbjct: 1  MELGSVVEFLENKSILVTGATGFLAKIFVEMILRI 35