Jatropha Genome Database

JcCB0308331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0308331.10 + phase: 0 /partial
         (60 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031953001 assembled CDS                                       124   7e-30
GSVIVT01017061001 assembled CDS                                       117   8e-28
GSVIVT01013686001 assembled CDS                                       106   2e-24
GSVIVT01022246001 assembled CDS                                       101   9e-23
GSVIVT01037551001 assembled CDS                                        57   2e-09
GSVIVT01006798001 assembled CDS                                        54   1e-08
GSVIVT01033123001 assembled CDS                                        52   4e-08
GSVIVT01023225001 assembled CDS                                        51   1e-07
GSVIVT01016457001 assembled CDS                                        49   7e-07
GSVIVT01016227001 assembled CDS                                        47   2e-06
GSVIVT01018291001 assembled CDS                                        47   3e-06
GSVIVT01032366001 assembled CDS                                        46   3e-06
GSVIVT01030140001 assembled CDS                                        46   4e-06
GSVIVT01005281001 assembled CDS                                        46   4e-06
GSVIVT01027396001 assembled CDS                                        45   9e-06

>GSVIVT01031953001 assembled CDS
          Length = 253

 Score =  124 bits (312), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 48  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 107


>GSVIVT01017061001 assembled CDS
          Length = 207

 Score =  117 bits (294), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/60 (95%), Positives = 58/60 (96%)

Query: 1  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1  MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60


>GSVIVT01013686001 assembled CDS
          Length = 205

 Score =  106 bits (265), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query: 1  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          M +RRRTLLKVI+LGDSGVGKTSLMNQYV+KKFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct: 1  MSARRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQ 60


>GSVIVT01022246001 assembled CDS
          Length = 205

 Score =  101 bits (251), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 1  MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          M + RRTLLKVI+LGDSGVGKTSLMNQYV KKFS QYKATIGADF+TKE+Q +D+L TLQ
Sbjct: 1  MAAPRRTLLKVIVLGDSGVGKTSLMNQYVYKKFSQQYKATIGADFVTKELQIDDKLVTLQ 60


>GSVIVT01037551001 assembled CDS
          Length = 91

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 33/36 (91%)

Query: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT 58
          + +++YV+KKFS QYKATIGA+F+TKE+Q +DRLFT
Sbjct: 14 NCLSRYVHKKFSQQYKATIGANFVTKELQIDDRLFT 49


>GSVIVT01006798001 assembled CDS
          Length = 72

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 28 YVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          YV+KKFS QYKATIGA+F+TKE+Q +DRL TL 
Sbjct: 1  YVHKKFSQQYKATIGANFVTKELQIDDRLVTLH 33


>GSVIVT01033123001 assembled CDS
          Length = 344

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/34 (67%), Positives = 30/34 (88%)

Query: 27  QYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +YV+KKFS QYKATIGA+F+TKE+Q +D+L TL 
Sbjct: 272 RYVHKKFSQQYKATIGANFVTKELQIDDQLVTLH 305


>GSVIVT01023225001 assembled CDS
          Length = 215

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L KV+++GDSGVGK++L++++   +F  + K+TIG +F T+ +Q E R    Q
Sbjct: 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQ 64


>GSVIVT01016457001 assembled CDS
          Length = 241

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 37/53 (69%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    Q
Sbjct: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64


>GSVIVT01016227001 assembled CDS
          Length = 200

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 35/53 (66%)

Query: 2  PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED 54
          P  +   +K+++LGDSGVGK+ ++ ++V  +F    K T+GA FL++ +  +D
Sbjct: 26 PDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD 78


>GSVIVT01018291001 assembled CDS
          Length = 205

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 5  RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          R  L K++++GDSGVGK+ L+ +Y +  +S  Y +TIG DF    ++ + R   LQ
Sbjct: 7  RDHLFKILLVGDSGVGKSCLLLRYADDTYSEAYISTIGVDFKICSMERDGRNLKLQ 62


>GSVIVT01032366001 assembled CDS
          Length = 209

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + R   LQ
Sbjct: 6  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQ 58


>GSVIVT01030140001 assembled CDS
          Length = 211

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + +  +++   LQ
Sbjct: 6  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQ 58


>GSVIVT01005281001 assembled CDS
          Length = 215

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR 55
          L K++I+GDS VGK++L+++Y   +F    KATIG +F T+ V  + +
Sbjct: 9  LFKIVIIGDSAVGKSNLLSRYARNEFDLHSKATIGVEFQTQCVDIDGK 56


>GSVIVT01027396001 assembled CDS
          Length = 239

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 34/53 (64%)

Query: 8  LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
          + KV+++GDS VGKT +++++   +F    K+TIG +F T+ V  + ++   Q
Sbjct: 29 VFKVVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEFQTRTVTIKSKVIKAQ 81