Jatropha Genome Database

JcCB0305381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0305381.10 - phase: 0 
         (239 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023936001 assembled CDS                                       244   3e-65
GSVIVT01023937001 assembled CDS                                       239   8e-64
GSVIVT01008882001 assembled CDS                                        84   4e-17
GSVIVT01019039001 assembled CDS                                        47   5e-06

>GSVIVT01023936001 assembled CDS
          Length = 367

 Score =  244 bits (622), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 145/195 (74%), Gaps = 2/195 (1%)

Query: 25  VGFKCTQNPSSTCNSLVGYKTPNATTLSHLQNFFGVKDFNSLLGANNLPFFTPSKYTVKK 84
             FKC+  P  TCN+LVGY +PN TTLS +Q  FGVK+F +LLGAN+LP  TP+  +V  
Sbjct: 15  ASFKCSSGP--TCNALVGYVSPNTTTLSAIQTLFGVKNFRTLLGANSLPASTPTNQSVAA 72

Query: 85  DAVVKIPFPCKCSNGTGVSNKKPIYTIQRGDWLDHIARDVFLALVTYQQIVAVNNITDGN 144
              + IPF C+CSNGTG+SN +P+YT+Q+ D L HIA +VF  LVTYQ+I AVNNI+D N
Sbjct: 73  KDKIVIPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDAN 132

Query: 145 KILVGQELQIPLPCSCDDVGGEKVVHYGHVVESGSSLDLIAQEYGTTMTTLMTLNSIAKA 204
            I VGQEL IPLPCSCD+V   KVVHYGHVVESGSS+  IA++YGTT  TL+ LN+I   
Sbjct: 133 LIEVGQELWIPLPCSCDEVNESKVVHYGHVVESGSSVAEIAEKYGTTEETLLELNNITDP 192

Query: 205 SSLMAGQVLDVPLKG 219
            +L AG VLDVPLK 
Sbjct: 193 KNLKAGDVLDVPLKA 207


>GSVIVT01023937001 assembled CDS
          Length = 357

 Score =  239 bits (610), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 147/198 (74%), Gaps = 3/198 (1%)

Query: 24  QVGFKC-TQNPSSTCNSLVGYKTPNATTLSHLQNFFGVKDFNSLLGANNLPFFT-PSKYT 81
           Q  F C +   S+TC++L+ Y +PN TTLS +Q  F VK+  +LLGAN+LP  T P++  
Sbjct: 23  QAAFTCNSTTRSTTCSALIDYVSPNTTTLSAIQTLFDVKNLRTLLGANSLPTSTSPNQSV 82

Query: 82  VKKDAVVKIPFPCKCSNGTGVSNKKPIYTIQRGDWLDHIARDVFLALVTYQQIVAVNNIT 141
             KD +V IPF C+CSNGTG+SN +P+YT+Q+ D L HIA +VF  LVTYQ+I AVNNI+
Sbjct: 83  AAKDKIV-IPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNIS 141

Query: 142 DGNKILVGQELQIPLPCSCDDVGGEKVVHYGHVVESGSSLDLIAQEYGTTMTTLMTLNSI 201
           D N I VGQEL IPLPCSCD+V G KVVHYGHVVE+GSS++LIA+EYGTT  TL+ LN I
Sbjct: 142 DANLIEVGQELWIPLPCSCDEVNGSKVVHYGHVVEAGSSVELIAEEYGTTQETLLRLNGI 201

Query: 202 AKASSLMAGQVLDVPLKG 219
               +L AG VLDVPLK 
Sbjct: 202 TDPKNLQAGAVLDVPLKA 219


>GSVIVT01008882001 assembled CDS
          Length = 408

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 13/193 (6%)

Query: 34  SSTCNSLVGYKTPNATTLSHLQNFFGVKDFNSLLGANNLPFFTP--SKYTVKKDAVVKIP 91
           S +CN++VGY       +S +   F V D  ++L AN +    P    + +     +KIP
Sbjct: 26  SDSCNAMVGYTLYTDLKVSEVATLFQV-DPIAILTANAIDISYPDVENHILPSQLFLKIP 84

Query: 92  FPCKCSNGT--GVSNKKPIYTIQRGDWLDHIARDVFLALVTYQQIVAVNNITDGNKILVG 149
             C C +G    V+ +   Y  +  D L  IA  ++  LV+  Q+   N+I+D + + VG
Sbjct: 85  IYCSCVDGIRKSVTTR---YKTRPSDTLSSIADSIYAGLVSADQLREANSISDPSVLDVG 141

Query: 150 QELQIPLPCSCDDVGGEKVV---HYGHVVESGSSLDLIAQEYGTTMTTLMTLNSIAKASS 206
           Q L +PLPC+C + G + ++   +  +VV+   +L  IA  Y TT++ LMT+N++  + +
Sbjct: 142 QTLVVPLPCTCFN-GTDNLLPATYLSYVVKVDDTLTGIASRYSTTISDLMTVNAMG-SPA 199

Query: 207 LMAGQVLDVPLKG 219
           + AG +L VPL  
Sbjct: 200 IKAGDILAVPLPA 212


>GSVIVT01019039001 assembled CDS
          Length = 590

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 27  FKCTQNPSSTCNSLVGYKT--PNATTLSHLQNFFGVKDFNSLLGANNLPFFTPSKYTVKK 84
           F CT +  ++C + V Y+   P    + ++ + FG+    S+  A+NL      +  +  
Sbjct: 32  FSCTTDSPASCQTYVIYRAQAPGFLDVGNISDLFGISRL-SIAEASNL---ASEEARLSP 87

Query: 85  DAVVKIPFPCKCSNGTGVSNKKPIYTIQRGDWLDHIARDVFLALVTYQQIVAVNNITDGN 144
           D ++ +P  C C+     +N    Y I+  D    ++  VF  L  Y  + A+N   +  
Sbjct: 88  DQLLLVPILCSCTGNHYFANIT--YKIKTDDSFYFVSVTVFENLTNYNAVEALNPGLEPT 145

Query: 145 KILVGQELQIPLPCSC 160
            + VG E+  PL C C
Sbjct: 146 TLQVGVEVVFPLFCKC 161