Jatropha Genome Database

JcCB0305141.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0305141.40 - phase: 2 /pseudo/partial
         (338 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016434001 assembled CDS                                       295   2e-80
GSVIVT01034063001 assembled CDS                                       250   7e-67
GSVIVT01023897001 assembled CDS                                       122   2e-28
GSVIVT01026930001 assembled CDS                                       110   7e-25
GSVIVT01015369001 assembled CDS                                       103   8e-23
GSVIVT01036908001 assembled CDS                                        94   1e-19
GSVIVT01017070001 assembled CDS                                        92   3e-19

>GSVIVT01016434001 assembled CDS
          Length = 814

 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 171/227 (75%), Gaps = 10/227 (4%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
           LS+E+VAL+IANRVE++IYVWR+R H KP T PNRSTA+SSWE+VKDLMVDGDK      
Sbjct: 342 LSSEHVALEIANRVEASIYVWRRRTHHKPMTNPNRSTAKSSWEMVKDLMVDGDKRELLAE 401

Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
                    KQRFP L+QTTLDTSKIQ NKDVGKSILESYSRVLESLAFNIVARIDDLLY
Sbjct: 402 RAESLFLSLKQRFPGLTQTTLDTSKIQCNKDVGKSILESYSRVLESLAFNIVARIDDLLY 461

Query: 208 VDDLTKHSDK-LSVSSVSVIAHKKVSLPYSVPVSGTPYKXXXXXXXXXXXXXLISPARGE 266
           VDDL K SDK  SV +VSVIAHK+VS+PYSVPVS TP K             LISPARGE
Sbjct: 462 VDDLNKQSDKHSSVPTVSVIAHKRVSIPYSVPVSSTPQK-TALTTLSRSPAPLISPARGE 520

Query: 267 RTPFLHNITMSNNNNKPHRRGFGVKRVLTNYLGGDTKAKICGNQTDG 313
           RTPFLH        NKP RRGFGVKRVL NYLG +TK K  GN T+G
Sbjct: 521 RTPFLH--------NKPPRRGFGVKRVLNNYLGVETKTKNSGNPTEG 559


>GSVIVT01034063001 assembled CDS
          Length = 1231

 Score =  250 bits (638), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 144/249 (57%), Positives = 175/249 (70%), Gaps = 11/249 (4%)

Query: 88   LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
            LS+E+ AL+IANRVE+++YVWR++ +SKP +  +RST+RSSWEIVKDLMVD DK      
Sbjct: 974  LSSEHQALEIANRVEASVYVWRRKTNSKPISNTSRSTSRSSWEIVKDLMVDADKRELLAE 1033

Query: 148  XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
                     KQRFP L QTTLD SKIQ+NKDVGKSILESYSRVLESLA NIVARIDD+LY
Sbjct: 1034 RAESLLHCMKQRFPGLPQTTLDMSKIQYNKDVGKSILESYSRVLESLASNIVARIDDVLY 1093

Query: 208  VDDLTKHSDK-LSVSSVSVIAHKKVSLPYSVPVSGTPYKXXXXXXXXXXXXXLISPARGE 266
            VDDLTKHSD+ LS+S V V+AHK VS+PYSVPV  TPYK             L+SPA G+
Sbjct: 1094 VDDLTKHSDQLLSISKVGVMAHKGVSIPYSVPVPNTPYK-TAFTTPSFSPGQLVSPANGD 1152

Query: 267  RTPFLHNITMSNNNNKPHRRGFGVKRVLTNYLGGDTKAKICGNQTDGLCPNSNANGTETA 326
            R+PF+      N+ N  H RGFGVK+VLT+YL  DTK + CG   +GL   S +N  + A
Sbjct: 1153 RSPFI------NDCNLLH-RGFGVKKVLTDYLSIDTKERGCGKPIEGL--ESISNTVQDA 1203

Query: 327  ILHQNAPKY 335
              HQ   ++
Sbjct: 1204 SAHQTGSEF 1212



 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 129/219 (58%), Gaps = 16/219 (7%)

Query: 90  TENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXXXX 149
           T   AL++ANRVE++I VW +R + KP +  ++ T+R SW+  K+LM D DK        
Sbjct: 419 TSEQALEVANRVEASIIVWHQRHYPKPVSIKSQPTSRQSWKAEKELMADADKTESIAERA 478

Query: 150 XXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLYVD 209
                  KQRFP L QTTL+ SK+QFNKD+GKSILESYSRVLESLA +I+ R+DDLLY+D
Sbjct: 479 ESLLFCIKQRFPGLPQTTLEMSKVQFNKDIGKSILESYSRVLESLAADILVRVDDLLYMD 538

Query: 210 DLTKHSDKLSVSSVSVIAHKKVSLPYSVPVSGTPYKXXXXXXXXXXXXXLISPARGERTP 269
           DLT     L ++ V V AH+ +S+PY +PVS TP +             +I PA+ E +P
Sbjct: 539 DLTNQF--LPITRVGVTAHESISIPYLLPVSSTPIETAVTTSGVSQGQQVI-PAKAETSP 595

Query: 270 FLHNITMSNNNNKPHR---RGFGVKRVLTNYLGGDTKAK 305
           F           KP +   RG   ++  T++   + K K
Sbjct: 596 FF----------KPSKLLLRGLSKRKPSTDFQNTERKGK 624


>GSVIVT01023897001 assembled CDS
          Length = 587

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 3/128 (2%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWE-IVKDLMVDGDKXXXXX 146
           LS+E+  L+IANR+E+A++VW+++   K P +      RS+W   VK L+ D +K     
Sbjct: 345 LSSEHHTLEIANRIEAAVHVWKQKDWKKQPKH--LKAKRSTWGGKVKGLVADTEKNQFLA 402

Query: 147 XXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLL 206
                     + RFP L QT LD +KIQ+NKDVG+SILESYSRV+ESLAFNI+ARIDD+L
Sbjct: 403 IRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL 462

Query: 207 YVDDLTKH 214
           YVDD  K 
Sbjct: 463 YVDDAVKR 470


>GSVIVT01026930001 assembled CDS
          Length = 495

 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 88/140 (62%), Gaps = 17/140 (12%)

Query: 76  KFLTHTWKHFQSLSTENVALDIANRVESAIYVWRKRV---HSKPPTYPNRSTARSSWEIV 132
           KF       +  +S+E+ AL++A+RVE+++Y WR++    HSK           SSW++V
Sbjct: 344 KFSPDQLMDYLHISSEHEALELADRVEASMYTWRRKACVAHSK-----------SSWDMV 392

Query: 133 KDLMVDG---DKXXXXXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSR 189
           K L+ +    DK               KQR+P LSQT+LD  KIQ+NKDVG++ILESYSR
Sbjct: 393 KQLISETERTDKNYVLAERAESLLFCLKQRYPELSQTSLDACKIQYNKDVGQAILESYSR 452

Query: 190 VLESLAFNIVARIDDLLYVD 209
           VLESLAF+IVA I+D+L+ D
Sbjct: 453 VLESLAFSIVAWIEDVLHED 472


>GSVIVT01015369001 assembled CDS
          Length = 536

 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 80/127 (62%), Gaps = 12/127 (9%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
           LST++  L+  N++E++I +W++++        N    +S+W     L    +K      
Sbjct: 336 LSTDHKVLEFKNKIEASIVIWKRKM--------NHKDGKSTWGSAVSL----EKRELFEE 383

Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
                    KQRFP L+Q+ LDTSKIQFN+DVG+SILESYSR+LESLAF +++RI+D++Y
Sbjct: 384 RAETILLLLKQRFPGLAQSQLDTSKIQFNRDVGQSILESYSRILESLAFTVMSRIEDVMY 443

Query: 208 VDDLTKH 214
            D L ++
Sbjct: 444 ADSLAQN 450


>GSVIVT01036908001 assembled CDS
          Length = 912

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 80/136 (58%), Gaps = 3/136 (2%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
           L +E+ AL+  NR+E+A++ W++R+  +      +S  R+SW  +KD   + DK      
Sbjct: 354 LKSEHSALEAINRLEAAVFAWKERITEQ---VSGKSPVRTSWSFIKDPTTELDKMELILF 410

Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
                    + R+P+L Q+ LD +KIQ+ KD+G SILE+YSRVL +LA +I+ R+ D+L 
Sbjct: 411 RAEALLQQLRTRYPNLPQSFLDVAKIQYGKDIGHSILEAYSRVLGNLASSILCRMRDILQ 470

Query: 208 VDDLTKHSDKLSVSSV 223
            D  +  +  ++ +S 
Sbjct: 471 EDVFSNPNSPIATTSC 486


>GSVIVT01017070001 assembled CDS
          Length = 434

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 73/119 (61%), Gaps = 12/119 (10%)

Query: 88  LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
           LS+    LD+ NR+E++I +W++++H+K          +S+W     L    +K      
Sbjct: 232 LSSNRKILDLKNRIEASIVIWKRKMHNK--------DGKSAWASAVSL----EKRELFEE 279

Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLL 206
                    KQR+P L Q+ LD +KIQFN+DVG +ILESYSR+LE+LAF +++RI+D+L
Sbjct: 280 RAETILLIIKQRYPGLDQSQLDINKIQFNQDVGHAILESYSRILETLAFTVLSRIEDVL 338