Jatropha Genome Database

JcCB0305141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0305141.10 - phase: 0 /partial
         (50 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016434001 assembled CDS                                        74   2e-14
GSVIVT01024853001 assembled CDS                                        64   1e-11
GSVIVT01001895001 assembled CDS                                        46   4e-06

>GSVIVT01016434001 assembled CDS
          Length = 814

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 40/47 (85%)

Query: 3   TSIHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITDPTCAASS 49
           T I ITA+DGI+NVNSLFTLAVF+GLAW+P D +NSLITDP C  +S
Sbjct: 647 TCIQITAIDGIVNVNSLFTLAVFIGLAWDPYDSSNSLITDPRCNPTS 693


>GSVIVT01024853001 assembled CDS
          Length = 610

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 1  MTTSIHITALDGIINVNSLFTLAVFLGLAWNP-SDPNNSL--ITDPTCAASSS 50
           +TSIHI ALDGI+NVNSLFT AVFLGLAW P +DP  +L  + +P C A ++
Sbjct: 40 FSTSIHIMALDGIVNVNSLFTFAVFLGLAWYPITDPAITLTGVAEPACVADTT 92


>GSVIVT01001895001 assembled CDS
          Length = 91

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 3/45 (6%)

Query: 5  IHITALDGIINVNSLFTLAVFLGLAWNPSDPN-NSLITDPTCAAS 48
          +H+TALDG++NVNSLFT+AVF+GL+   + PN +SL     C A 
Sbjct: 31 VHVTALDGLVNVNSLFTIAVFVGLSL--TTPNQHSLENRAGCDAG 73