Jatropha Genome Database

JcCB0304921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0304921.10 + phase: 2 /partial
         (92 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006024001 assembled CDS                                       133   2e-32
GSVIVT01007963001 assembled CDS                                        62   4e-11
GSVIVT01027978001 assembled CDS                                        57   1e-09
GSVIVT01017760001 assembled CDS                                        57   1e-09

>GSVIVT01006024001 assembled CDS
          Length = 267

 Score =  133 bits (334), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 65/73 (89%)

Query: 6   REPHLREAGNGKGSWRRPFITHFTGCQPCSGDHNKMYEGDSCWKGMVKALNFADNQVLRK 65
           REP+L++AGNG+ SWRRPFITHFTGCQPCSG HN+MY G+SCW  M KALNFADNQVLR 
Sbjct: 155 REPYLKKAGNGRYSWRRPFITHFTGCQPCSGKHNQMYAGESCWNSMQKALNFADNQVLRN 214

Query: 66  YGFVHPDLLDSKT 78
           +GFVHPDLLDS T
Sbjct: 215 FGFVHPDLLDSST 227


>GSVIVT01007963001 assembled CDS
          Length = 294

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 39/65 (60%), Gaps = 6/65 (9%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R PF+THF GC+PC   GD    Y  + C + M +A NFADNQVL+ YGF H  L
Sbjct: 214 GLGDERWPFVTHFVGCKPCGSYGD----YPVERCLRSMERAFNFADNQVLKLYGFRHRGL 269

Query: 74  LDSKT 78
           L  K 
Sbjct: 270 LSPKI 274


>GSVIVT01027978001 assembled CDS
          Length = 382

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R P +THF GC+PC   GD    Y  + C K M +A NF DNQVL+ YGF H  L
Sbjct: 290 GLGDHRWPLVTHFVGCKPCGKFGD----YPVERCLKQMDRAFNFGDNQVLQIYGFTHKSL 345


>GSVIVT01017760001 assembled CDS
          Length = 427

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R P +THF GC+PC   GD    Y  + C K M +A NF DNQ+L+ YGF H  L
Sbjct: 319 GLGDHRWPLVTHFVGCKPCGKFGD----YPVERCLKQMDRAFNFGDNQILQIYGFTHKSL 374

Query: 74  LDSKT 78
              + 
Sbjct: 375 ASRRV 379