Jatropha Genome Database

JcCB0304081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0304081.10 + phase: 0 
         (135 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009735001 assembled CDS                                        63   5e-11
GSVIVT01018929001 assembled CDS                                        52   7e-08

>GSVIVT01009735001 assembled CDS
          Length = 272

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
            R ++ L    P V  DA+VAP+  + G V V  G+S+W G VLRGD+N I+VG  +N+Q
Sbjct: 42  HRTLMNLFDKAPIVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQ 101

Query: 111 ERCVVHAAWNSPTG 124
           +  +VH A ++ +G
Sbjct: 102 DNSLVHVAKSNLSG 115


>GSVIVT01018929001 assembled CDS
          Length = 228

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 62  PKVAVDAYV--APNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQERCVVHAAW 119
           P VA DA V  AP   + G V V   +S+W G VLRGD+N I++G  +N+++  +VH A 
Sbjct: 8   PVVAKDASVSVAPTASVIGDVKVGQRSSIWYGCVLRGDVNSISIGSGTNIEDNALVHVAR 67

Query: 120 NSPTG 124
           +S +G
Sbjct: 68  SSLSG 72