Jatropha Genome Database

JcCB0302981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302981.10 + phase: 0 /pseudo/partial
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012513001 assembled CDS                                       442   e-124
GSVIVT01034037001 assembled CDS                                       228   2e-60
GSVIVT01034516001 assembled CDS                                       196   2e-50
GSVIVT01034034001 assembled CDS                                       195   2e-50
GSVIVT01016373001 assembled CDS                                        69   3e-12

>GSVIVT01012513001 assembled CDS
          Length = 362

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/227 (92%), Positives = 219/227 (96%)

Query: 72  DPLDGSRNIDASIPTGTIFGVYKRLVELDHLPQEERATLNSLQSGTKLVAAGYVLYSSAT 131
           DPLDGSRNIDASIPTGTIFG+Y RLVELDHLP+EE+  LNSLQSG KLVAA YVLYSSAT
Sbjct: 136 DPLDGSRNIDASIPTGTIFGIYNRLVELDHLPKEEKTMLNSLQSGLKLVAAVYVLYSSAT 195

Query: 132 ILCASFGSGTHAFTLDHSTGDFILTHPDIKIPPRGQIYSVNDARYFDWPEGLRQYIDTVR 191
           ILC SFGSGTHAFTLDHSTGDFILTHP+IKIPPRGQIYSVNDARYFDWP+GLRQYIDTVR
Sbjct: 196 ILCTSFGSGTHAFTLDHSTGDFILTHPNIKIPPRGQIYSVNDARYFDWPQGLRQYIDTVR 255

Query: 192 QGKGRYPKKYSARYICSLVADFHRTLLYGGIAMNPRHHLRLVYEANPLSFLVEQAGGRGS 251
           QGKG+YPKKYSARYICSLVADFHRTL+YGG+AMNPR HLRLVYEANPLSFLVEQAGGRGS
Sbjct: 256 QGKGKYPKKYSARYICSLVADFHRTLMYGGVAMNPRSHLRLVYEANPLSFLVEQAGGRGS 315

Query: 252 DGKVRILSIQPVKLHQRLPLFLGSLEDIEELESYGNVQQKLNPGYEV 298
           DGK+RILSIQPVKLHQRLPLFLGS EDIEELESYGNVQQK+NPGYEV
Sbjct: 316 DGKIRILSIQPVKLHQRLPLFLGSPEDIEELESYGNVQQKVNPGYEV 362


>GSVIVT01034037001 assembled CDS
          Length = 355

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/231 (51%), Positives = 155/231 (67%), Gaps = 19/231 (8%)

Query: 71  LDPLDGSRNIDASIPTGTIFGVYKRLVE----------LDHLPQEERATLNSLQSGTKLV 120
            DPLDGS NIDA++ TG+IFG+Y    E          LD    E+R  +N  Q G+ L+
Sbjct: 126 FDPLDGSSNIDAAVSTGSIFGIYSPNDECLADIGDDSTLDS--TEQRCVVNVCQPGSNLL 183

Query: 121 AAGYVLYSSATILCASFGSGTHAFTLDHSTGDFILTHPDIKIPPRGQIYSVNDARYFDWP 180
           AAGY +YSS+ I   S G+G  AFTLD   G+F+LT  +I+IP  G+IYS N+  Y  W 
Sbjct: 184 AAGYCMYSSSIIFVVSIGTGVFAFTLDPMYGEFVLTQENIQIPKSGKIYSFNEGNYQLWD 243

Query: 181 EGLRQYIDTVRQGKGRYPKKYSARYICSLVADFHRTLLYGGIAMNPRH------HLRLVY 234
           + L++YID ++   G   K YSARYI SLV DFHRTLLYGGI   PR        LRL+Y
Sbjct: 244 DKLKKYIDDLKD-PGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLY 302

Query: 235 EANPLSFLVEQAGGRGSDGKVRILSIQPVKLHQRLPLFLGSLEDIEELESY 285
           E  P+S+LVEQAGG+GSDG  RIL IQPV++HQR+PL++GS+E++E+LE Y
Sbjct: 303 ECAPMSYLVEQAGGKGSDGHQRILDIQPVEIHQRVPLYIGSVEEVEKLEKY 353


>GSVIVT01034516001 assembled CDS
          Length = 339

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/228 (46%), Positives = 146/228 (64%), Gaps = 15/228 (6%)

Query: 71  LDPLDGSRNIDASIPTGTIFGVYKRLVELDHLPQEERATLNSLQSGTKLVAAGYVLYSSA 130
            DPLDGS NID  +  GTIFG+Y  +V+    P  +    N LQ G  ++AAGY +Y S+
Sbjct: 120 FDPLDGSSNIDCGVSIGTIFGIY--MVKDGGEPTLD----NVLQPGKNMLAAGYCMYGSS 173

Query: 131 TILCASFGSGTHAFTLDHSTGDFILTHPDIKIPPRGQIYSVNDARYFDWPEGLRQYIDTV 190
             L  S G+G + FTLD S G+FILTHP+IKIP +G+IYSVN+    +W     +Y++  
Sbjct: 174 CTLVLSTGTGVNGFTLDPSLGEFILTHPNIKIPKKGKIYSVNEGNTKNWDAPTAKYVEKC 233

Query: 191 RQGK-GRYPKKYSARYICSLVADFHRTLLYGGIAM------NPRHHLRLVYEANPLSFLV 243
           +  K G  PK  S RYI S+VAD HRTLLYGGI +      +P   LR++YE  P+SFL+
Sbjct: 234 KFPKDGSSPK--SLRYIGSMVADVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLM 291

Query: 244 EQAGGRGSDGKVRILSIQPVKLHQRLPLFLGSLEDIEELESYGNVQQK 291
           EQAGG+   GK R L + P  +H+R P+FLGS +D+EE+++    ++K
Sbjct: 292 EQAGGQAFTGKQRALDLVPKNIHERSPIFLGSYDDVEEIKALYAAEEK 339


>GSVIVT01034034001 assembled CDS
          Length = 374

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/229 (46%), Positives = 149/229 (65%), Gaps = 18/229 (7%)

Query: 71  LDPLDGSRNIDASIPTGTIFGVY----KRLVELDH---LPQ-EERATLNSLQSGTKLVAA 122
            DP+DGS NID S+ T +IFG+Y    + L ++D    L Q +++  ++  Q G+ L+AA
Sbjct: 148 FDPIDGSANIDTSLTTESIFGIYGPDEQCLFDIDDDSMLDQTKQKCVVSVCQPGSNLLAA 207

Query: 123 GYVLYSSATILCASFGSGTHAFTLDHSTGDFILTHPDIKIPPRGQIYSVNDARYFDWPEG 182
           GY LYSS+ +   S G G  AFTLD + G+F+LTH DIKIP  G+IYS N+  +  W + 
Sbjct: 208 GYCLYSSSVVFTLSIGKGVFAFTLDPTFGEFVLTHADIKIPRSGKIYSFNEGNHELWDDN 267

Query: 183 LRQYIDTVRQGKGRYPKKYSARYICSLVADFHRTLLYGGIAMNPRH------HLRLVYEA 236
           L++Y+  +RQ  G   K YS RYI  LV + HR LLYGGI  NP++      +LRL+YE 
Sbjct: 268 LKRYLHHLRQ-PGPNGKPYSGRYIGCLVGEIHRMLLYGGIYGNPKNMNSKKGNLRLLYEC 326

Query: 237 NPLSFLVEQAGGRGSDGKVRILSIQPVKLHQRLPLFLGSLEDIEELESY 285
            P+S+LVEQAGG+ +DG  RIL IQP    +R P+F+GS  ++E+LE Y
Sbjct: 327 APMSYLVEQAGGKATDGNQRILDIQPT---ERTPIFIGSPVEVEKLEKY 372


>GSVIVT01016373001 assembled CDS
          Length = 393

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 35/234 (14%)

Query: 70  SLDPLDGSRNIDASIPTGTIFGVYKRLVELDHLPQEERATLNSLQSGTKLVAAGYVLYSS 129
           + DPLDGS  +D +   GTIFGV+         P ++   +    +G   VAA   +Y  
Sbjct: 174 AFDPLDGSSIVDTNFTVGTIFGVW---------PGDKLTGV----TGRDQVAAAMGIYGP 220

Query: 130 AT--ILCASFGSGTHAFTL-DHSTGDFILTHPDIKIPPRGQIYSVNDAR-YFDWPEGLRQ 185
            T  +L      GTH F L D      +    +I     G+++S  + R  FD P+  + 
Sbjct: 221 RTTYVLALKDIPGTHEFLLLDEGKWQHVKDTTEIG---EGKLFSPGNLRATFDNPDYDKL 277

Query: 186 YIDTVRQGKGRYPKKYSARYICSLVADFHRTLLY-GGIAMN-----PRHHLRLVYEANPL 239
               VR+       KY+ RY   +V D ++ ++   GI  N      +  LRL++E  PL
Sbjct: 278 INYYVRE-------KYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPSSKAKLRLLFEVAPL 330

Query: 240 SFLVEQAGGRGSDGKVRILSIQPVKLHQRLPLFLGSLEDIEELES--YGNVQQK 291
            FL+E+AGG  SDG   +L      L +R  +  GS  +I   E   YG+ + K
Sbjct: 331 GFLIEKAGGFSSDGTQSVLDKVINNLDERTQVAYGSKNEIIRFEETLYGSSRLK 384