Jatropha Genome Database

JcCB0302671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302671.10 - phase: 0 /pseudo/partial
         (197 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036290001 assembled CDS                                       184   3e-47

>GSVIVT01036290001 assembled CDS
          Length = 871

 Score =  184 bits (466), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 93/148 (62%), Positives = 110/148 (74%), Gaps = 1/148 (0%)

Query: 51  IGFVSQWGRRESACI-YVSSSVKAVLLDESKEKAYLSKGGMWSVHKFGGTCVGSSERIKN 109
           +G+V QWGRR+S+ +  +S+SV  V LD+S EK  L KG  WSVHKFGGTCVG+SERIKN
Sbjct: 1   MGYVCQWGRRKSSNMQLISASVMDVSLDKSMEKVQLPKGDNWSVHKFGGTCVGTSERIKN 60

Query: 110 VAEIIVNDGSEGKLVVVSALSKVTDMLYDLIYKAQSRDDSYIAAADAVFEKHKXXXXXXX 169
           VAEIIV D SE KLVVVSA+SKVTDM+YDLIYKAQSRDDSYI+A DAV EKH+       
Sbjct: 61  VAEIIVKDDSERKLVVVSAMSKVTDMMYDLIYKAQSRDDSYISAVDAVLEKHRLTALDLL 120

Query: 170 XXXXXXXXXXQLQHDVNNLKAMLRAIFI 197
                     +L HD+N +K MLRAI+I
Sbjct: 121 DGDDLASFLSRLHHDINEIKEMLRAIYI 148