Jatropha Genome Database

JcCB0302351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302351.10 - phase: 1 /partial
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008164001 assembled CDS                                       177   1e-45
GSVIVT01036533001 assembled CDS                                       121   1e-28
GSVIVT01010100001 assembled CDS                                       107   2e-24

>GSVIVT01008164001 assembled CDS
          Length = 565

 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/152 (64%), Positives = 113/152 (74%), Gaps = 2/152 (1%)

Query: 1   QPNFFNSGRSGGIVNQLPPRMVSDAENIANQPQPQSHNTRL-CTSDGAVAADKLKEQELS 59
           QPN F     GG + QLPPR+  DAEN+A+ PQ Q   +R   T++  VA+DKLKEQEL+
Sbjct: 413 QPNIFTPVVGGGGLAQLPPRLAPDAENMASLPQSQLWQSRSSVTTECTVASDKLKEQELT 472

Query: 60  IEGGTINISSVYSQGLLNTLTQALQSSGVDLSLASISVQIQLGKRANRRPILPTSIVKDN 119
           IEGGTI+ISS YSQGLLNTLTQALQSSGVDLS ASISVQI LG +AN RP  PT I+KDN
Sbjct: 473 IEGGTISISSAYSQGLLNTLTQALQSSGVDLSKASISVQIDLGNKANSRPTAPTPIIKDN 532

Query: 120 EVPCSNQGTTRPRV-SDGEESGQALKKLKTSK 150
           +VP SN  T R RV S G +S QALK+ KT K
Sbjct: 533 QVPSSNHATARSRVASSGGDSDQALKRHKTCK 564


>GSVIVT01036533001 assembled CDS
          Length = 402

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 92/133 (69%), Gaps = 3/133 (2%)

Query: 22  VSDAENIANQPQPQSHNTRLCTSDGAVAADKLKE-QELSIEGGTINISSVYSQGLLNTLT 80
           VSD ENIA+QP P   + R CT+D AV ++ + E +EL+IE GT++ISS YSQGLLN+LT
Sbjct: 270 VSDVENIASQPLPHFSHGRPCTTDCAVPSNTVNEPEELTIESGTVSISSAYSQGLLNSLT 329

Query: 81  QALQSSGVDLSLASISVQIQLGKRANRRPILPTSIVKDNEVPC-SNQGTTRPRV-SDGEE 138
           QALQSSGVDLS ASISVQI +GKRAN+     TS  KD E P  SN+        S  E+
Sbjct: 330 QALQSSGVDLSQASISVQIDIGKRANKGLNATTSNAKDYENPSPSNRTMAHSGFRSSSED 389

Query: 139 SGQALKKLKTSKS 151
           S QA K+L+T  S
Sbjct: 390 SDQAHKRLRTDTS 402


>GSVIVT01010100001 assembled CDS
          Length = 328

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 79/109 (72%), Gaps = 3/109 (2%)

Query: 43  TSDGAVAADKL-KEQELSIEGGTINISSVYSQGLLNTLTQALQSSGVDLSLASISVQIQL 101
           ++D  + ++ L K++EL IEGGTI+ISS YSQGLLNTLTQALQSSGVDLS ASISVQI L
Sbjct: 220 SADCPITSETLSKKEELMIEGGTISISSAYSQGLLNTLTQALQSSGVDLSQASISVQIDL 279

Query: 102 GKRANRRPILPTSIVKDNE-VPCSNQGTTRPR-VSDGEESGQALKKLKT 148
           GKRANR     TSI KD+E  P SN      R  S  E+S Q+ K+LKT
Sbjct: 280 GKRANRGLPSGTSIAKDHENPPPSNHIIAHHRDASSAEDSDQSQKRLKT 328