Jatropha Genome Database

JcCB0301651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0301651.10 + phase: 0 /partial
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021187001 assembled CDS                                       224   2e-59
GSVIVT01021186001 assembled CDS                                       135   1e-32

>GSVIVT01021187001 assembled CDS
          Length = 530

 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/218 (57%), Positives = 143/218 (65%), Gaps = 7/218 (3%)

Query: 1   MQSPV---RFSSCRGVAFEIKPHSNPFTLSPVP---EEPTXXXXXXXXXXXXXXXKVFPS 54
           M+SP    RFSSCRGVAFEIKPHS+PF + P P   +                  + +PS
Sbjct: 45  MKSPEKFPRFSSCRGVAFEIKPHSDPFAV-PTPLVVDGRCGSNRFWFPWNQDGSFRAYPS 103

Query: 55  TTIQRSVSRASSHFCXXXXXXXXXXXXXXXXXXGKQEEIKEFTPNPLPSASKREQAPKPA 114
            ++ RS+SR SSHFC                  G   E KE    P+   SKREQ    A
Sbjct: 104 DSLGRSMSRISSHFCDLDIDENDFEDDLKDLEQGAVHEEKEQKLVPVSFTSKREQPATVA 163

Query: 115 RKPESRLSVILLDQGLFTVYKRLFVVSLTLNITALVLAATSHFPYARNRAALFSIANILA 174
           R+ ESRLS+ILLDQG FTVYKRLF+V L LNI  LVLAAT HFPYAR +AALFSI NILA
Sbjct: 164 RQLESRLSIILLDQGPFTVYKRLFMVCLLLNIIGLVLAATGHFPYARRKAALFSIGNILA 223

Query: 175 LTLCRSEAFLRVVFWLAVKVLGRSWIPLPIKTATTSLL 212
           LTLCRSEAFLRVVFWLAVKVLG+SW+PL +KTATTSLL
Sbjct: 224 LTLCRSEAFLRVVFWLAVKVLGQSWVPLGLKTATTSLL 261


>GSVIVT01021186001 assembled CDS
          Length = 1124

 Score =  135 bits (341), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/110 (62%), Positives = 84/110 (76%)

Query: 88  GKQEEIKEFTPNPLPSASKREQAPKPARKPESRLSVILLDQGLFTVYKRLFVVSLTLNIT 147
           G+ +++++    P     K++ APK  +  ESRLS+ILLDQGLFTVYKRL +V L LNIT
Sbjct: 797 GESQDLEKQVLVPKGDQIKQDDAPKVEKPRESRLSIILLDQGLFTVYKRLLLVCLALNIT 856

Query: 148 ALVLAATSHFPYARNRAALFSIANILALTLCRSEAFLRVVFWLAVKVLGR 197
           ALV AAT +FPYA+  AALFSI NILAL+LCRSEAFLRVVFWL VK+  R
Sbjct: 857 ALVFAATGYFPYAKCNAALFSIGNILALSLCRSEAFLRVVFWLVVKLQRR 906