Jatropha Genome Database

JcCB0298051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0298051.10 + phase: 1 /partial
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012037001 assembled CDS                                       192   4e-50

>GSVIVT01012037001 assembled CDS
          Length = 371

 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 91/109 (83%), Positives = 101/109 (92%)

Query: 1   SLDLAVVLPLYVAGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIAC 60
           SLD A+V PLY++GV WTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEW++GFGIAC
Sbjct: 244 SLDPAIVFPLYISGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWLSGFGIAC 303

Query: 61  ISSLALSGVSADLGWPFYAFLAAASGHLTWQIWTVDLSSRADCNKKYVN 109
           ISSLALSG +ADLGWP+Y  L AASGHLTWQIWTVDLS RADCN+K+V+
Sbjct: 304 ISSLALSGFNADLGWPYYVALMAASGHLTWQIWTVDLSCRADCNRKFVS 352