Jatropha Genome Database

JcCB0297821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0297821.10 - phase: 0 /partial
         (252 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010321001 assembled CDS                                       201   2e-52
GSVIVT01001846001 assembled CDS                                       126   1e-29

>GSVIVT01010321001 assembled CDS
          Length = 400

 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/253 (49%), Positives = 136/253 (53%), Gaps = 79/253 (31%)

Query: 1   MALNFSHRPLFPGILPEDNLVSPMRIANGYLVEGIPDKVDNCFDYGRDRGDRCGSQ-DSV 59
           MALNFSHRP+FP  L EDNLVSP+RIANG        +V +CFDYGRDR DR GSQ +SV
Sbjct: 1   MALNFSHRPIFPAHLAEDNLVSPIRIANG--------EVADCFDYGRDRDDRGGSQQESV 52

Query: 60  HKDILDLLPSDPFGMDISTTFTAITGWLEDLEVDYGGYGRDQVATSGGNYQLFAGLNFIW 119
             DILDLLPSDPFGMDISTTFTAITGWLEDLEVDYGG                       
Sbjct: 53  SNDILDLLPSDPFGMDISTTFTAITGWLEDLEVDYGG----------------------- 89

Query: 120 NNAMRFQTFPGNMGFDNSMNAFRELGNASAHDAGCLEEKEVGDASSHCALGLVCNVDDIL 179
                FQ  PG    D+  +     GN +   A C  E                      
Sbjct: 90  -----FQALPGKAWLDDKSDIACGSGNENVCGASCQAE---------------------- 122

Query: 180 SLGNEIMGNGDTGAVDERCVEFHESSGVCSDGDGGAPHGAFGFALGYLGVRDLLVVETVC 239
                               EF E +G C DGDG APH A  FALGYLG+RDLL VE VC
Sbjct: 123 --------------------EFREFNGSCYDGDGAAPHAAVSFALGYLGLRDLLSVERVC 162

Query: 240 RSLRSTVRSDPLL 252
           RSLR+TV+SDPLL
Sbjct: 163 RSLRATVQSDPLL 175


>GSVIVT01001846001 assembled CDS
          Length = 489

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 122/253 (48%), Gaps = 48/253 (18%)

Query: 20  LVSPMRIANGYLVEGIPDKV--------------DNCFDYGRDRGDRCGSQDSVHKDILD 65
           + S +   NGY V+G  DK               DN  D    + ++ GS ++V  DI+D
Sbjct: 12  MFSSVNFINGYFVDGFGDKSLDGFGNLLNMDCESDNPQDRRMGKSEKEGSCEAVSDDIVD 71

Query: 66  LLPSDPFGMDISTTFTAITGWLEDLEVDYGGYG---RDQVATSGGNYQLFAGLNFIWNNA 122
            LP+DPF MDI TTFTA  GW+ D E D  G+G    + +   G +  L+A LN +W+ A
Sbjct: 72  RLPADPFNMDIRTTFTAFKGWVGDFEKDSIGFGVGEMEAMEAEGEDRGLYANLNLVWSGA 131

Query: 123 MRFQTFPGNMGFDNSMNAFRELGNASAHDAGCLEEKEVGDASSHCALGLVCNVDDILSL- 181
           MRFQ    N       N F           G L +K++ D              + LS  
Sbjct: 132 MRFQPEFSNAEKSVPCNEF----------DGLLMDKDLCDGG----------FSEFLSFS 171

Query: 182 --GNEIMGNGDTGAVDERCVEFHESSGVCSDGDGGAPHGAFGFALGYLGVRDLLVVETVC 239
             GN I GN +         EF   + V  D + G PH A  F+L YLGV+DLLVVE VC
Sbjct: 172 RHGNRINGNQEK--------EFQACTKVHPDDETGEPHDALFFSLAYLGVQDLLVVERVC 223

Query: 240 RSLRSTVRSDPLL 252
           RSL + VRSDPLL
Sbjct: 224 RSLCNVVRSDPLL 236