Jatropha Genome Database

JcCB0297551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0297551.10 - phase: 0 /partial
         (52 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013749001 assembled CDS                                        49   4e-07
GSVIVT01013750001 assembled CDS                                        49   5e-07
GSVIVT01013758001 assembled CDS                                        47   1e-06
GSVIVT01013757001 assembled CDS                                        47   3e-06
GSVIVT01013755001 assembled CDS                                        47   3e-06

>GSVIVT01013749001 assembled CDS
          Length = 617

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 26/29 (89%)

Query: 24  FVIRSNGDQIRISSLVGKIVGLYFSGSWC 52
           ++IR+NG+Q++I+SL GK +GLYFS SWC
Sbjct: 101 YLIRNNGNQVKITSLRGKKIGLYFSASWC 129


>GSVIVT01013750001 assembled CDS
          Length = 542

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 1  MATELVNGVXXXXXXXXXXXXXXFVIRSNGDQIRISSLVGKIVGLYFSGSWC 52
          MAT+ ++GV              F++R+NG Q+++ SL GK + LYFS SWC
Sbjct: 1  MATDKIDGVSHDLVLLLTSEDRDFLVRNNGHQVKVESLKGKKIWLYFSASWC 52


>GSVIVT01013758001 assembled CDS
          Length = 540

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 1  MATELVNGVXXXXXXXXXXXXXXFVIRSNGDQIRISSLVGKIVGLYFSGSWC 52
          MA+E V+GV              F++R NG Q+++ SL GK + LYFS SWC
Sbjct: 1  MASENVDGVAHDLVPLLTREDRDFLVRCNGHQVKVESLKGKKIWLYFSASWC 52


>GSVIVT01013757001 assembled CDS
          Length = 807

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 1  MATELVNGVXXXXXXXXXXXXXXFVIRSNGDQIRISSLVGKIVGLYFSGSWC 52
          M +E V+GV              F++R+NG Q+++ SL GK + LYFS SWC
Sbjct: 1  MDSENVDGVAHDLVSLLTREDRDFLVRNNGHQVKVESLKGKKIWLYFSASWC 52


>GSVIVT01013755001 assembled CDS
          Length = 490

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 1  MATELVNGVXXXXXXXXXXXXXXFVIRSNGDQIRISSLVGKIVGLYFSGSWC 52
          M +E V+GV              F++R+NG Q+++ SL GK + LYFS SWC
Sbjct: 1  MDSENVDGVAHDLVSLLTREDRDFLVRNNGHQVKVESLKGKKIWLYFSASWC 52