Jatropha Genome Database

JcCB0296811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0296811.10 + phase: 1 /partial
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027578001 assembled CDS                                       251   2e-67
GSVIVT01018449001 assembled CDS                                       237   3e-63
GSVIVT01030838001 assembled CDS                                       223   5e-59
GSVIVT01037102001 assembled CDS                                       204   3e-53
GSVIVT01010790001 assembled CDS                                        84   7e-17
GSVIVT01034028001 assembled CDS                                        79   1e-15
GSVIVT01012237001 assembled CDS                                        69   2e-12

>GSVIVT01027578001 assembled CDS
          Length = 371

 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/175 (70%), Positives = 140/175 (80%)

Query: 12  AQGKESPVVCFGEILIDFVPNESGVSLAESSGFKKXXXXXXXXXXXXXXRLGGHSAFIGK 71
           +Q K   VVCFGE+LIDFVP   GVSL+ES  FKK              RLGG SAFIGK
Sbjct: 45  SQEKRPLVVCFGEMLIDFVPTVGGVSLSESPAFKKAPGGAPANVAVGISRLGGSSAFIGK 104

Query: 72  VGEDEFGYMLADVLKENKVDNSGLCFDPNARTALSFVTLRPDGEREFMFYRNPSADMLLS 131
           VGEDEFG+MLAD+LK+N VD+SG+ FD NARTAL+FVTLR DGEREFMF+RNPSADMLL 
Sbjct: 105 VGEDEFGFMLADILKQNNVDSSGMRFDRNARTALAFVTLRDDGEREFMFFRNPSADMLLR 164

Query: 132 ETEIHEALIRKASIFHYGSISLIEEPCKSAHLAGMDIAKKAGCILSYDPNLRLAI 186
           E+E+   LI+KASIFHYGSISLIEEPCKSAHLA M+IA+K+G ILSYDPNLRL +
Sbjct: 165 ESELDANLIKKASIFHYGSISLIEEPCKSAHLAAMNIARKSGSILSYDPNLRLPL 219


>GSVIVT01018449001 assembled CDS
          Length = 346

 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/186 (62%), Positives = 139/186 (74%)

Query: 1   SWKKLSSRKDAAQGKESPVVCFGEILIDFVPNESGVSLAESSGFKKXXXXXXXXXXXXXX 60
           +++ L      A  K S VVCFGE+LIDFVP   GVSLAE+  FKK              
Sbjct: 9   NYEDLPLNTGGADNKSSLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAAGGAPANVAVGIS 68

Query: 61  RLGGHSAFIGKVGEDEFGYMLADVLKENKVDNSGLCFDPNARTALSFVTLRPDGEREFMF 120
           +LGG SAFIGKVG+DEFG+MLAD+LK+N V+NSG+ FD +ARTAL+FV+LR DGEREF+F
Sbjct: 69  KLGGSSAFIGKVGDDEFGHMLADILKKNNVNNSGMRFDHSARTALAFVSLRADGEREFLF 128

Query: 121 YRNPSADMLLSETEIHEALIRKASIFHYGSISLIEEPCKSAHLAGMDIAKKAGCILSYDP 180
           +RNPSADML  E+E+   L+ +A IFHYGSISLIEEPC+S HLA M IAKKAG ILSYDP
Sbjct: 129 FRNPSADMLFHESELDLKLLEQAKIFHYGSISLIEEPCRSTHLAAMTIAKKAGSILSYDP 188

Query: 181 NLRLAI 186
           NLRL +
Sbjct: 189 NLRLKL 194


>GSVIVT01030838001 assembled CDS
          Length = 384

 Score =  223 bits (568), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 132/172 (76%)

Query: 15  KESPVVCFGEILIDFVPNESGVSLAESSGFKKXXXXXXXXXXXXXXRLGGHSAFIGKVGE 74
           + S VVCFGE+LIDFVP  +G+SLAE+  FKK              RLGG SAFIGKVGE
Sbjct: 62  ENSLVVCFGEMLIDFVPTSNGLSLAEAPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGE 121

Query: 75  DEFGYMLADVLKENKVDNSGLCFDPNARTALSFVTLRPDGEREFMFYRNPSADMLLSETE 134
           DEFGYMLAD+LKEN V+N G+ FDP ARTAL+FVTLR DGEREFMFYRNPSADMLL E E
Sbjct: 122 DEFGYMLADILKENNVNNEGMRFDPGARTALAFVTLRKDGEREFMFYRNPSADMLLQEDE 181

Query: 135 IHEALIRKASIFHYGSISLIEEPCKSAHLAGMDIAKKAGCILSYDPNLRLAI 186
           +   LIRKA IFHYGSISLI EPCKSAHLA    AK AG I+SYDPNLRL +
Sbjct: 182 LDFDLIRKAKIFHYGSISLITEPCKSAHLAAAKAAKDAGVIVSYDPNLRLPL 233


>GSVIVT01037102001 assembled CDS
          Length = 313

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 132/162 (81%)

Query: 25  ILIDFVPNESGVSLAESSGFKKXXXXXXXXXXXXXXRLGGHSAFIGKVGEDEFGYMLADV 84
           +LIDFVP+ +GVSLAES+GF K              +LGG+SAFIGKVG+DEFG+ML D+
Sbjct: 1   MLIDFVPDSAGVSLAESTGFLKAPGGAPANVACAITKLGGNSAFIGKVGDDEFGHMLVDI 60

Query: 85  LKENKVDNSGLCFDPNARTALSFVTLRPDGEREFMFYRNPSADMLLSETEIHEALIRKAS 144
           LK+N V++ G+CFD +ARTAL+FVTL+ +GEREFMFYRNPSADMLL+E+E++  LI++A 
Sbjct: 61  LKKNGVNSEGVCFDAHARTALAFVTLKKNGEREFMFYRNPSADMLLTESELNMGLIKQAK 120

Query: 145 IFHYGSISLIEEPCKSAHLAGMDIAKKAGCILSYDPNLRLAI 186
           IFHYGSISLI EPC+SAH+A M  AK+AG +LSYDPN+RL +
Sbjct: 121 IFHYGSISLISEPCRSAHMAAMKAAKEAGILLSYDPNVRLPL 162


>GSVIVT01010790001 assembled CDS
          Length = 207

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 128 MLLSETEIHEALIRKASIFHYGSISLIEEPCKSAHLAGMDIAKKAGCILSYDPNLRLAI 186
           MLL   E++  LIR A +FHYGSISLI EPC+SAHL  M++AK+AG +LSYDPNLRL +
Sbjct: 1   MLLKPEELNLELIRSAKVFHYGSISLIVEPCRSAHLRAMEVAKEAGALLSYDPNLRLPL 59


>GSVIVT01034028001 assembled CDS
          Length = 674

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 72/126 (57%)

Query: 61  RLGGHSAFIGKVGEDEFGYMLADVLKENKVDNSGLCFDPNARTALSFVTLRPDGEREFMF 120
           RLGG +AF+GKVG DEFG  L   + + KV    + FD NART  S++ ++ +  +  M 
Sbjct: 378 RLGGRAAFMGKVGRDEFGEELVLTMNKEKVQTRAVKFDSNARTGCSYMRIKFENGKMMME 437

Query: 121 YRNPSADMLLSETEIHEALIRKASIFHYGSISLIEEPCKSAHLAGMDIAKKAGCILSYDP 180
               S +  L  +E++ A++++A IFH+ S  L      S+    ++++KK G ++ +D 
Sbjct: 438 TVKESPEDSLLSSELNIAVLKEARIFHFNSEVLTSPSMHSSLFGAIELSKKHGGLVFFDL 497

Query: 181 NLRLAI 186
           NL L +
Sbjct: 498 NLPLPL 503


>GSVIVT01012237001 assembled CDS
          Length = 565

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 62  LGGHSAFIGKVGEDEFGYMLADVLKENKVDNSGLCFDPNARTALSFVTLRPDGEREFMFY 121
           LGG  AF+GK+G+D+FG  +   +  + V    +C D    TA+S + +   G  +    
Sbjct: 254 LGGKVAFMGKLGDDDFGQTMLYYMNVSNVQTRSVCIDGKKATAVSQMKIGRRGGLKMTCV 313

Query: 122 RNPSADMLLSETEIHEALIRKASIFHYGSISLIEEPCKSAHLAGMDIAKKAGCILSYDPN 181
           + P A+  LS +EI+  ++R+A +F++ + SL+++   S     + I+KK G ++ YD N
Sbjct: 314 K-PCAEDSLSRSEINIDVLREAKMFYFNTSSLLDQNMASTTFRAIKISKKLGGVIFYDLN 372

Query: 182 LRLAI 186
           L L +
Sbjct: 373 LPLPL 377