Jatropha Genome Database

JcCB0295761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0295761.10 - phase: 2 /partial
         (172 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015824001 assembled CDS                                       219   4e-58
GSVIVT01015821001 assembled CDS                                       196   5e-51

>GSVIVT01015824001 assembled CDS
          Length = 522

 Score =  219 bits (559), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 118/139 (84%), Gaps = 7/139 (5%)

Query: 3   VLDINSFVSGSFSHGFTYSGHPVSCAVAIEALKIYKYGENIPEQVSKIAPKFQDGLKAFS 62
           V+D  S   G FSHGFTYSGHPVSCAVA+EALKIYK   NI E V +I+PKFQ+GLKAFS
Sbjct: 362 VIDSQSNKLGVFSHGFTYSGHPVSCAVALEALKIYK-ERNIAEVVQRISPKFQNGLKAFS 420

Query: 63  DSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWG------VGAYFGAQCEKHGMLVRVAG 116
           DSPIIGEIRGTGLILGTEFTDNKSPND FPPEWG      +GAYFGAQC+KHGMLVRVAG
Sbjct: 421 DSPIIGEIRGTGLILGTEFTDNKSPNDVFPPEWGNLLPNSIGAYFGAQCQKHGMLVRVAG 480

Query: 117 DNIMMSPPLTISPEEVDEV 135
           D+IMMSPP  I+PEEVDE+
Sbjct: 481 DSIMMSPPFIITPEEVDEL 499


>GSVIVT01015821001 assembled CDS
          Length = 493

 Score =  196 bits (497), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 117/143 (81%), Gaps = 9/143 (6%)

Query: 1   NRVLDINSFVSGSFSHGFTYSGHPVSCAVAIEALKIYKYGENIPEQVSKIAPKFQDGLKA 60
           + V+  +S   GSF+HGFT+SGHPVSCAVA+E LKIY+   NI EQV  ++P+FQDG++A
Sbjct: 329 SEVIHSHSNKLGSFAHGFTFSGHPVSCAVALEVLKIYRE-RNIIEQVQSLSPRFQDGIRA 387

Query: 61  FSDSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEW--------GVGAYFGAQCEKHGMLV 112
           FSDSPIIGEIRGTGL++G EFTDNKSPND FPPEW        GVGAYFGA+C+KHGM+V
Sbjct: 388 FSDSPIIGEIRGTGLLIGIEFTDNKSPNDSFPPEWGNRRWGIAGVGAYFGAECKKHGMIV 447

Query: 113 RVAGDNIMMSPPLTISPEEVDEV 135
           R AG+ I++SPPL ISPEEV+++
Sbjct: 448 RSAGNIIVLSPPLIISPEEVEKI 470