Jatropha Genome Database

JcCB0294291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0294291.10 - phase: 0 /partial
         (171 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031548001 assembled CDS                                       124   2e-29

>GSVIVT01031548001 assembled CDS
          Length = 392

 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 103/189 (54%), Gaps = 32/189 (16%)

Query: 1   FYEELVHGKDTSVDLAELPNKPLNKKIKFVYSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           F+EELVHGKD+ V L+ LPNKP+NKKIKF YS                            
Sbjct: 68  FFEELVHGKDSGVKLSMLPNKPMNKKIKFSYS--------------DSGSDDDDDDIDDE 113

Query: 61  XXKSDVNQNSDAKSEVPTNEKLSFPNVENTCGANQREEKTKDSEDSGND----------- 109
             KSD+++  DA  E P+NEK      ++ C  NQ +EK  D    GN+           
Sbjct: 114 EDKSDLHREKDANDENPSNEKSHPQKNDDVCRENQNKEKADDKTQDGNENQENDADGEKA 173

Query: 110 -------LENPTSEAKEPPAKKQCLDTCVSKSTIHEKMEEKSVDKLIEDELKELGDKSKR 162
                   EN   +A+EP AKKQCL+T  S   IHEK EEKS+DKLIE EL+ELGD++KR
Sbjct: 174 DKNTEDGNENQEVDAEEPSAKKQCLETDASTHIIHEKTEEKSIDKLIEAELQELGDRNKR 233

Query: 163 RFANLDSGC 171
           RF NLDSGC
Sbjct: 234 RFGNLDSGC 242