Jatropha Genome Database

JcCB0294151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0294151.10 + phase: 0 /partial
         (230 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013720001 assembled CDS                                       261   2e-70
GSVIVT01024008001 assembled CDS                                       246   9e-66
GSVIVT01013745001 assembled CDS                                        85   3e-17

>GSVIVT01013720001 assembled CDS
          Length = 545

 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 168/236 (71%), Gaps = 21/236 (8%)

Query: 1   MNVFQSLIERLRPLVGLKGWDYCVLWIFSDDQRFLEWMECCCGGTED-IKNGGDEVQFPL 59
           +N+ QSL ERLRPLVGLK WDYCVLW  S+DQRFL+WM+CCC G+E+  +NG +E+ FP+
Sbjct: 2   VNMVQSLKERLRPLVGLKSWDYCVLWKLSEDQRFLDWMDCCCAGSENSTQNGEEEILFPV 61

Query: 60  SSSC-CRDLIFQHQRTKSCELLAQLPTSIPLDSGIHAQTLISNQPRWLNFSSCSDSSVLE 118
           SS   CRD + QH RTKSC+LLAQLP+SI LDSGIH QTLISNQPRWLNF + SDSSVLE
Sbjct: 62  SSVLPCRDAMLQHPRTKSCDLLAQLPSSISLDSGIHGQTLISNQPRWLNFCNSSDSSVLE 121

Query: 119 GTVGTRALIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSII-REQEAIINSTNMEASFAX 177
            TVGTR LIPV GGL+ELFV  QV+EDQ +++FVT+QC+II  EQEA++NS+N++  F+ 
Sbjct: 122 ETVGTRLLIPVLGGLIELFVANQVAEDQHVVNFVTTQCNIILMEQEAMMNSSNIDTIFSV 181

Query: 178 XXXXXSEQQSSKPFLAVDQXXXXXXXPQINQFQLAHQ---ALEDLNNLAYDISGNR 230
                +  +   P                N FQ       ALE+LN+L +DIS  R
Sbjct: 182 NANAGNADEEKDPN---------------NHFQATISPVTALENLNDLPFDISVER 222


>GSVIVT01024008001 assembled CDS
          Length = 573

 Score =  246 bits (627), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 147/182 (80%), Gaps = 6/182 (3%)

Query: 1   MNVFQSLIERLRPLVGLKG--WDYCVLWIFSDDQRFLEWMECCC--GGTEDIKNGGDEVQ 56
           +N+ QSL+ERLRPLVGLK   WDYCVLW  S+DQRFL+WM+CCC  GG    +NGG+E  
Sbjct: 37  INMVQSLMERLRPLVGLKSRDWDYCVLWKLSEDQRFLDWMDCCCAGGGENSTQNGGEEHL 96

Query: 57  FPLSSSC-CRDLIFQHQRTKSCELLAQLPTSIPLDSGIHAQTLISNQPRWLNFSSCSDSS 115
           FP+SS   CRD + QH RTKSC+LLAQLP+SI LDSGIH QTLISNQPRWLNF + SDSS
Sbjct: 97  FPVSSVLPCRDAMSQHPRTKSCDLLAQLPSSISLDSGIHGQTLISNQPRWLNFCNSSDSS 156

Query: 116 VLEGTVGTRALIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIR-EQEAIINSTNMEAS 174
           +LE TVGT  LIPV GGL+ELFV KQV+EDQ +I+FVT+QC +I  EQEA++NS+N+ + 
Sbjct: 157 ILEETVGTGLLIPVLGGLIELFVAKQVAEDQHVINFVTTQCHMISMEQEAMMNSSNINSI 216

Query: 175 FA 176
           F+
Sbjct: 217 FS 218


>GSVIVT01013745001 assembled CDS
          Length = 96

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 8  IERLRPLVGLKGWDYCVLWIFSDD-QRFLEWMECCCGGTEDIKNGGDEVQFPLSSSCCRD 66
          +E LRPLV  K WDYCV+W   DD  RF+EWM+CCCGG   + N   E +       CRD
Sbjct: 1  MEWLRPLVEKKTWDYCVVWKLGDDPSRFVEWMDCCCGGGYGLANVKVEREGQHLPPLCRD 60

Query: 67 LIFQHQ-RTKSCELLAQLPTSIPLDSG 92
             QH  RT++CE LAQ P+ +PL SG
Sbjct: 61 RYSQHPVRTRACEALAQFPSFMPLYSG 87