Jatropha Genome Database

JcCB0293861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293861.20 - phase: 0 /partial
         (102 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025296001 assembled CDS                                       178   5e-46
GSVIVT01002005001 assembled CDS                                       144   6e-36
GSVIVT01008142001 assembled CDS                                       109   3e-25
GSVIVT01035388001 assembled CDS                                        80   3e-16
GSVIVT01020575001 assembled CDS                                        47   2e-06

>GSVIVT01025296001 assembled CDS
          Length = 296

 Score =  178 bits (451), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/99 (87%), Positives = 93/99 (93%)

Query: 3   FQDSFWASFALGWAVTNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQIIKNEGAK 62
            QDSF+ASFALGW +TNGAGLASYPIDTVRRRMMMTSGEAVKYKSS DAF+QI+KNEGAK
Sbjct: 197 LQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFNQILKNEGAK 256

Query: 63  SLFKGGGANILRAIAGAGVLAGYDKLQVIAFGKKYGSGG 101
           SLFKG GANILRA+AGAGVLAGYDKLQV+  GKKYGSGG
Sbjct: 257 SLFKGAGANILRAVAGAGVLAGYDKLQVLVLGKKYGSGG 295


>GSVIVT01002005001 assembled CDS
          Length = 164

 Score =  144 bits (364), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 78/91 (85%)

Query: 5  DSFWASFALGWAVTNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQIIKNEGAKSL 64
          DSF+ASFAL W +TN AGLASYP++TVRRRMMMTSGEAVK+KS FDAF+Q++KNEG KSL
Sbjct: 3  DSFFASFALCWLITNDAGLASYPMETVRRRMMMTSGEAVKHKSFFDAFAQVLKNEGIKSL 62

Query: 65 FKGGGANILRAIAGAGVLAGYDKLQVIAFGK 95
          FKG  ANIL A+A AGVLAGYDKLQ I   +
Sbjct: 63 FKGADANILCAVADAGVLAGYDKLQEILITR 93


>GSVIVT01008142001 assembled CDS
          Length = 310

 Score =  109 bits (272), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 73/96 (76%)

Query: 3   FQDSFWASFALGWAVTNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQIIKNEGAK 62
           F+ +F+ASF LGW++T  +G+ +YP DT+RRRMM+TSG+ +KY S+  A  +I++ EG  
Sbjct: 208 FEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGQPLKYSSTMHAVLEIVRLEGFT 267

Query: 63  SLFKGGGANILRAIAGAGVLAGYDKLQVIAFGKKYG 98
           +L++G  AN+L  +AGAGVLAGYD+L  IA+ + YG
Sbjct: 268 ALYRGVTANMLLGMAGAGVLAGYDQLHRIAYRRGYG 303


>GSVIVT01035388001 assembled CDS
          Length = 323

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 6   SFWASFALGWAVTNGAGLASYPIDTVRRRMMMTSG-EAVKYKSSFDAFSQIIKNEGAKSL 64
           + W  +A   AVT  AGL SYP+DTVRRRMMM SG E   Y+S+ + +  I + EG  S 
Sbjct: 231 ALWKRWAAAQAVTTSAGLLSYPLDTVRRRMMMQSGLERPMYRSTLECWRTIYRTEGVASF 290

Query: 65  FKGGGANILRAIAGAGVLAGYDKLQ 89
           ++G  +N+ R+  GA +L  YD+++
Sbjct: 291 YRGAVSNMFRSTGGAAILVLYDEVK 315


>GSVIVT01020575001 assembled CDS
          Length = 249

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 47/90 (52%)

Query: 4   QDSFWASFALGWAVTNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQIIKNEGAKS 63
           QDSF ASF LGW +T GA                                          
Sbjct: 197 QDSFLASFLLGWGITIGA------------------------------------------ 214

Query: 64  LFKGGGANILRAIAGAGVLAGYDKLQVIAF 93
                GANILRA+AGAGVLAGYDKLQ++  
Sbjct: 215 -----GANILRAVAGAGVLAGYDKLQLLVL 239