Jatropha Genome Database
- JcCB0293691.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0293691.20 - phase: 1 /partial
(337 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01017521001 assembled CDS 503 e-143
GSVIVT01030257001 assembled CDS 67 2e-11
GSVIVT01017859001 assembled CDS 60 1e-09
GSVIVT01031163001 assembled CDS 55 6e-08
GSVIVT01035856001 assembled CDS 50 2e-06
GSVIVT01035624001 assembled CDS 47 9e-06
>GSVIVT01017521001 assembled CDS
Length = 434
Score = 503 bits (1295), Expect = e-143, Method: Compositional matrix adjust.
Identities = 252/337 (74%), Positives = 274/337 (81%), Gaps = 33/337 (9%)
Query: 1 FTPRITGCGILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEG 60
FTPRITGCGILS+VVGCK LTVLHL RCLNV+SVEWLEYLGKLETLEDLSIKNCR IGE
Sbjct: 131 FTPRITGCGILSLVVGCKKLTVLHLIRCLNVSSVEWLEYLGKLETLEDLSIKNCRAIGE- 189
Query: 61 DLIKLGYSWRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCIISPG 120
AVDRWQKQLVPCE+MLELSLVNCIISPG
Sbjct: 190 --------------------------------AVDRWQKQLVPCENMLELSLVNCIISPG 217
Query: 121 RGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXX 180
RGLAC+L KCKNLEKI LDMCVGVRDCDI+GLAQKS NLRSISLR PSDFS
Sbjct: 218 RGLACLLEKCKNLEKIRLDMCVGVRDCDIVGLAQKSSNLRSISLRGPSDFSLPLLLSNPL 277
Query: 181 XXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSF 240
TD+SLKA+AQNC MLES+R+SF+DGEFPSFSSFTLNGIL +IQMCPIR+LSLDHVYSF
Sbjct: 278 RLTDESLKALAQNCSMLESIRISFTDGEFPSFSSFTLNGILTVIQMCPIRKLSLDHVYSF 337
Query: 241 NDTGMEALCMAQFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGMTDDGLMPLIG 300
ND GMEALC A +LETLELVRCQEI+DEGLQL A FP LC+LRL KCLG+TDDG PL+G
Sbjct: 338 NDVGMEALCSAPYLETLELVRCQEITDEGLQLVAQFPHLCVLRLSKCLGVTDDGFKPLVG 397
Query: 301 SYKLETLTVEDCPQISERGVQGAARTVSFRQDLSWMY 337
SYKLE L+VE+CPQISERGVQGAAR+VSF+QDLSW+Y
Sbjct: 398 SYKLELLSVENCPQISERGVQGAARSVSFKQDLSWIY 434
>GSVIVT01030257001 assembled CDS
Length = 663
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 149/376 (39%), Gaps = 65/376 (17%)
Query: 5 ITGCGILSVVVGCKILTVLHLNRCLNVTSVEW--------------LEYLG--------- 41
IT GI + VGCK L + L CL V + L YL
Sbjct: 163 ITDMGIGCIAVGCKKLRSISLKWCLGVGDLGVGLIAVKCKQIRHLDLSYLPITNKCLPCI 222
Query: 42 -KLETLEDLSIKNCRVIGEGDLIKLGYSWRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQ 100
+L+ LEDL + C I + L+ L + + +KKL N ++ + + R +Q
Sbjct: 223 LQLQYLEDLILVGCFSIDDDSLVALKHGCKSLKKLDMSSCQNVSHVGLSSLTSDARSLQQ 282
Query: 101 LV-----P-----CESMLELSLVNCIISPG-----RGLACVLGKCKNLEKIHLDMCVGVR 145
L P +S+ +LS++ I G GL + C L ++ L C+GV
Sbjct: 283 LALAYGSPVTHALADSLQDLSMLQSIKLDGCAVTYAGLKGIGNSCALLREVSLSKCLGVT 342
Query: 146 DCDIIGLAQKSRNLRSISL---RVPSDFSXXXXXXXXXXXTDDSLKA-----------VA 191
D + L K R+LR + + R + S T +++ +
Sbjct: 343 DEGLSSLVMKHRDLRKLDVTCCRKITQVSIAYITNSCPALTSLKMESCTLVPSEAFVLIG 402
Query: 192 QNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSFNDTGME--ALC 249
Q C LE L +D E G+ ++ + + L L + D G+ +C
Sbjct: 403 QRCLCLE--ELDLTDNEIDD------EGLKSISRCFKLTSLKLGICLNITDEGLGHVGMC 454
Query: 250 MAQFLETLELVRCQEISDEGLQLAAH-FPRLCILRLRKCLGMTDDGLMPLIGSYKLETLT 308
++ +E L+L RC I+D G+ AH P L ++ + C +TD L+ L +L T
Sbjct: 455 CSKLIE-LDLYRCVGITDSGILAIAHGCPGLEMINVAYCKDITDSSLISLSKCPRLNTFE 513
Query: 309 VEDCPQISERGVQGAA 324
CP I+ G+ A
Sbjct: 514 SRGCPSITSLGLAAIA 529
>GSVIVT01017859001 assembled CDS
Length = 611
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 74/332 (22%)
Query: 9 GILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYS 68
G+ ++ GC L L +N C N+ ++ L +L++ C+ IG+ L+++G
Sbjct: 334 GLEAIATGCSELIHLEVNGCHNIGTLGLASVGKSCLRLTELALLYCQRIGDNALLEIGRG 393
Query: 69 WRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCIISPGRGLACVLG 128
+ ++ L LV C S+ + ++ C I+ G
Sbjct: 394 CKFLQALH------------------------LVDCSSIGDDAI--CGIANG-------- 419
Query: 129 KCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLK 188
C+NL+K+H+ C + + I+ + + ++L+ +SLR DD+L
Sbjct: 420 -CRNLKKLHIRRCYEIGNKGIVAVGENCKSLKDLSLRFCDRVG------------DDALI 466
Query: 189 AVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSFNDTGMEAL 248
A+ Q C S + GI+A+ + CP ELS V + G A
Sbjct: 467 AIGQGC--------SLNHLNVSGCHQIGDAGIIAIARGCP--ELSYLDVSVLQNLGDMA- 515
Query: 249 CMAQF------LETLELVRCQEISDEGLQLAAHFPRLCIL----RLRKCLGMTDDGLMPL 298
MA+ L+ + L C++I+D GL AH + C + + C G+T G+ +
Sbjct: 516 -MAEIGEGCPSLKDIVLSHCRQITDVGL---AHLVKKCTMLETCHMVYCPGITTAGVATV 571
Query: 299 IGSY-KLETLTVEDCPQISERGVQGAARTVSF 329
+ + ++ + VE ++SER + A +S+
Sbjct: 572 VSTCPNIKKVLVEK-SKVSERTRRRAGSVISY 602
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 134/311 (43%), Gaps = 38/311 (12%)
Query: 20 LTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYSWRKVKKLQFEV 79
L L L C NVTS+ + GK +L L ++ C V G+ L +G ++++
Sbjct: 139 LKKLSLIWCSNVTSMGLQSFAGKCRSLRSLDLQGCYV-GDQGLAAVGECCKELQ------ 191
Query: 80 DANYRYMKVYDRLAVDRWQKQL-VPC-ESMLELSLVNCIISPGRGLACVLGKCKNLEKIH 137
D N R+ + D+ +L + C +S+ L + C L V C++LE +
Sbjct: 192 DLNLRFCEGL----TDKGLVELAIGCGKSLKVLGIAACAKITDISLEAVGSHCRSLETLS 247
Query: 138 LDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLKAVAQNCKML 197
LD + + ++ +A+ R L+ + L + TD++L+AV C L
Sbjct: 248 LDSEF-IHNEGVLAVAEGCRLLKVLKLLCIN-------------VTDEALEAVGTCCLSL 293
Query: 198 ESVRLSFSDGEFPSFSSFTLNGILALIQMC-PIRELSLDHVYSFNDTGMEALCMA-QFLE 255
E + L SF FT + A+ + C ++ L L Y +D G+EA+ L
Sbjct: 294 EVLAL-------YSFQKFTDRSLSAIGKGCKKLKNLILSDCYFLSDKGLEAIATGCSELI 346
Query: 256 TLELVRCQEISDEGL-QLAAHFPRLCILRLRKCLGMTDDGLMPL-IGSYKLETLTVEDCP 313
LE+ C I GL + RL L L C + D+ L+ + G L+ L + DC
Sbjct: 347 HLEVNGCHNIGTLGLASVGKSCLRLTELALLYCQRIGDNALLEIGRGCKFLQALHLVDCS 406
Query: 314 QISERGVQGAA 324
I + + G A
Sbjct: 407 SIGDDAICGIA 417
>GSVIVT01031163001 assembled CDS
Length = 643
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 135/335 (40%), Gaps = 53/335 (15%)
Query: 16 GCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKL--GYSWRKVK 73
GC L V+ ++RC V+S + + G DL +L GYS+ ++
Sbjct: 247 GCPSLLVIDVSRCDGVSSSGLISL----------------IRGHSDLQQLNAGYSFPELS 290
Query: 74 KLQFEVDANYRYMKVYDRLAVD-------RWQKQLVPCESMLELSLVNCIISPGRGLACV 126
K+ F + MK + + VD +Q C+ ++E+ L C+ G+ +
Sbjct: 291 KMFFR---QLKDMKDLNSIKVDGARVSDFSFQIISANCKCLVEIGLSKCMGVTDLGIMQL 347
Query: 127 LGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXX----- 181
+ C NL+ ++L C + D I+ +A RNL + L + +
Sbjct: 348 VSGCLNLKIVNLTCCCFITDAAILAVADSCRNLLCLKLESCNLITEKSLDQLGSCCLLLE 407
Query: 182 ---------XTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMC-PIRE 231
D L+ +++ C L ++L ++ + G+ + C +RE
Sbjct: 408 ELDLTDCSGVNDRGLEYLSR-CSELTCLKLGLC-------ANISDKGLFYIASNCKKLRE 459
Query: 232 LSLDHVYSFNDTGMEALCMA-QFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGM 290
L L S + + AL + LE L L C E++D G++ + L L LR + +
Sbjct: 460 LDLYRCNSIGNDELAALSSGCKKLEKLNLSYCSEVTDTGMEYISQLKDLSDLELRGLVKI 519
Query: 291 TDDGLMPL-IGSYKLETLTVEDCPQISERGVQGAA 324
T GL + G +L L ++ C +I + G A
Sbjct: 520 TSTGLTAVAAGCMRLAELDLKHCQKIKDSGFWALA 554
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 34/269 (12%)
Query: 13 VVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYSWRKV 72
+ CK L + L++C+ VT + ++ + L+ +++ C I + ++ + S R +
Sbjct: 321 ISANCKCLVEIGLSKCMGVTDLGIMQLVSGCLNLKIVNLTCCCFITDAAILAVADSCRNL 380
Query: 73 KKLQFEVDANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCIISPGRGLACVLGKCKN 132
L+ E N K D+L + + L +C RGL L +C
Sbjct: 381 LCLKLE-SCNLITEKSLDQLGSCCLLLEELD--------LTDCSGVNDRGLE-YLSRCSE 430
Query: 133 LEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLKAVAQ 192
L + L +C + D + +A + LR + L + +D L A++
Sbjct: 431 LTCLKLGLCANISDKGLFYIASNCKKLRELDLYRCNSIG------------NDELAALSS 478
Query: 193 NCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMCPIRELSLDHVYSFNDTGMEAL---C 249
CK LE + LS+ S T G+ + Q+ + +L L + TG+ A+ C
Sbjct: 479 GCKKLEKLNLSYC-------SEVTDTGMEYISQLKDLSDLELRGLVKITSTGLTAVAAGC 531
Query: 250 MAQFLETLELVRCQEISDEGLQLAAHFPR 278
M L L+L CQ+I D G A++ R
Sbjct: 532 MR--LAELDLKHCQKIKDSGFWALAYYSR 558
>GSVIVT01035856001 assembled CDS
Length = 610
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 139/336 (41%), Gaps = 45/336 (13%)
Query: 3 PRITGCGILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKL-ETLEDLSIKNCRVIGEGD 61
P I+ ++++ C LT L + C + + L+ +G+ L+ +SIKNC ++G+
Sbjct: 218 PTISDKALVAIAKNCHNLTALTIESCPRIGNA-GLQAVGQFCPNLKSISIKNCPLVGDQG 276
Query: 62 LIKL----GYSWRKVKKLQFEV-DANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCI 116
+ L Y+ KVK + D + + Y + D L +++ E +
Sbjct: 277 VASLLSSASYALTKVKLHALNITDVSLAVIGHYGKAITDL---DLTGLQNVGERGFW--V 331
Query: 117 ISPGRGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXX 176
+ G GL + L+ + + C GV D + + + NL+ LR + S
Sbjct: 332 MGSGHGL-------QKLKSLTVTSCQGVTDMGLEAVGKGCPNLKQFCLRKCAFLS----- 379
Query: 177 XXXXXXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMC--PIRELSL 234
D+ L ++A+ LES++L T G+ + C ++ L+L
Sbjct: 380 -------DNGLVSLAKVAASLESLQLE-------ECHHITQYGVFGALVSCGGKLKSLAL 425
Query: 235 DHVYSFNDT--GMEALCMAQFLETLELVRCQEISDEGLQLAAHF-PRLCILRLRKCLGMT 291
+ + DT G+ + + L +L + C + L + P+L L L L +T
Sbjct: 426 VNCFGIKDTVEGLPLMTPCKSLSSLSIRNCPGFGNASLCMVGKLCPQLQRLDLSGALRIT 485
Query: 292 DDGLMPLIGSYKLETLTVE--DCPQISERGVQGAAR 325
+ G +PL+ S + + V C +++ V A+
Sbjct: 486 NAGFLPLLESCEASLIKVNLSGCMNLTDNVVSALAK 521
>GSVIVT01035624001 assembled CDS
Length = 359
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 187 LKAVAQNCKMLESVRLS---FSDGEFPSFSSFTLNG-ILALIQMC-PIRELSLDHVYSFN 241
L+ VAQ C +E + L+ D S LNG I A+ C +R++ L N
Sbjct: 75 LECVAQTCPKIEVLNLNTRKMHDDLDESDELSGLNGGIHAIANGCRELRKVYLRRRGIGN 134
Query: 242 DTGMEALCMAQFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGMTDDGLMPLIG- 300
+ L + L L+L RC I+D+ L+ + LC+L LR C +TD GL L
Sbjct: 135 FGVVSLLNFGKNLTELDLGRCNRITDQALEAIGYATSLCVLNLRCCWLITDSGLAMLANG 194
Query: 301 --SYKLETLTVEDCPQISERGV 320
+ L+ L + +C +I++ G+
Sbjct: 195 STARTLKKLIIAECERITDYGL 216