Jatropha Genome Database

JcCB0293691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293691.10 - phase: 0 /partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020266001 assembled CDS                                       145   3e-36
GSVIVT01017522001 assembled CDS                                        70   3e-13
GSVIVT01021525001 assembled CDS                                        54   1e-08
GSVIVT01022201001 assembled CDS                                        51   2e-07
GSVIVT01024609001 assembled CDS                                        51   2e-07
GSVIVT01030227001 assembled CDS                                        47   3e-06
GSVIVT01015821001 assembled CDS                                        45   8e-06

>GSVIVT01020266001 assembled CDS
          Length = 467

 Score =  145 bits (367), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 81/100 (81%), Gaps = 4/100 (4%)

Query: 29  ACLNVDVQTTNSVKLNL----KSKEVMEIEAKVLVGTYARNPLVLSSGKGCKLYDPEGRE 84
           ACLNV+V+   S  L      +SK+VME+E +V+VGTYAR P+VL SGKGCKLYD EGRE
Sbjct: 41  ACLNVEVKAPKSANLGKLGFGESKDVMEMEGRVIVGTYARTPIVLVSGKGCKLYDAEGRE 100

Query: 85  YLDCTSGIAVNALGHGDPDWVRAVTEQANLLTHVSNVYYS 124
           YLD +SGIAVN+LGHGDP W++AV EQAN LTHVSN+YYS
Sbjct: 101 YLDMSSGIAVNSLGHGDPTWLKAVIEQANTLTHVSNIYYS 140


>GSVIVT01017522001 assembled CDS
          Length = 364

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 34/36 (94%)

Query: 89  TSGIAVNALGHGDPDWVRAVTEQANLLTHVSNVYYS 124
           T+GIAVNALGHGDPDW++AV EQAN LTHVSN++YS
Sbjct: 2   TAGIAVNALGHGDPDWLKAVVEQANTLTHVSNMFYS 37


>GSVIVT01021525001 assembled CDS
          Length = 466

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 47  SKEVMEIEAKVLVGTYARNPLVLSSGKGCKLYDPEGREYLDCTSGIAVNALGHGDPDWVR 106
           S+ ++ +E +     Y   P+V S  KG  ++DPEG++YLD  S  +    GH  P  ++
Sbjct: 30  SQHLINLEYEYSAHNYHPIPIVFSQAKGSTIWDPEGKKYLDFLSAYSAVNQGHCHPKVLK 89

Query: 107 AVTEQANLLTHVSNVYYS 124
           A+ EQA  LT  S  +Y+
Sbjct: 90  ALVEQAERLTLSSRAFYN 107


>GSVIVT01022201001 assembled CDS
          Length = 472

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 47  SKEVMEIEAKVLVGT---YARNPLVLSSGKGCKLYDPEGREYLDCTSGIAVNALGHGDPD 103
           + EV++   K L  +   Y + P+ +  GK   L+D  G+ YLD  +GI   + GH  P+
Sbjct: 52  ADEVLQKRKKFLGSSLFYYYQKPVNVVEGKMQYLFDENGKRYLDAFAGIVTVSCGHCHPE 111

Query: 104 WVRAVTEQANLLTHVSNVY 122
            + A+ EQ+ LL H + +Y
Sbjct: 112 ILNAIIEQSKLLQHATTIY 130


>GSVIVT01024609001 assembled CDS
          Length = 436

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 31/61 (50%)

Query: 62  YARNPLVLSSGKGCKLYDPEGREYLDCTSGIAVNALGHGDPDWVRAVTEQANLLTHVSNV 121
           +  NPL L  GK   L+D  GR YLD   GIA    GH  PD V A+  Q   L H + +
Sbjct: 34  FYSNPLNLVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPDVVEAIVSQTQRLQHSTVL 93

Query: 122 Y 122
           Y
Sbjct: 94  Y 94


>GSVIVT01030227001 assembled CDS
          Length = 436

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 62  YARNPLVLSSGKGCKLYDPEGREYLDCTSGIAVNALGHGDPDWVRAVTEQANLLTHVSNV 121
           +   P+ +  GK   L+D +GR YLD   GIA    GH  PD V  + +Q N L H + +
Sbjct: 34  FYNQPVNIVDGKMQYLFDEKGRRYLDAFGGIATVNCGHCHPDVVDVIVKQINRLQHSTVL 93

Query: 122 Y 122
           Y
Sbjct: 94  Y 94


>GSVIVT01015821001 assembled CDS
          Length = 493

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 17  PAVDLPRSFKTRACLNVDVQTTNSVKLNLKSKEVMEIEAKVLVGTYARN--PLVLSSGKG 74
           PA  L +   T   L    Q  +S   N K  +  ++ +    G  + N  PL++   +G
Sbjct: 6   PAPALAKCSSTETSL----QKEDSATKNAKGFKGHDMLSPFTTGWQSTNLDPLLIERSEG 61

Query: 75  CKLYDPEGREYLDCTSGIAVNALGHGDPDWVRAVTEQANLL 115
             +YD  GR+YLD  +G+   ALG  +P  + A T Q N L
Sbjct: 62  PYVYDSNGRKYLDALAGLWCTALGGSEPRLIAAATAQLNTL 102