Jatropha Genome Database

JcCB0293431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293431.10 + phase: 1 /partial
         (353 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001463001 assembled CDS                                       674   0.0  
GSVIVT01033233001 assembled CDS                                       638   0.0  
GSVIVT01003989001 assembled CDS                                        59   3e-09
GSVIVT01032665001 assembled CDS                                        52   5e-07

>GSVIVT01001463001 assembled CDS
          Length = 465

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/353 (89%), Positives = 340/353 (96%)

Query: 1   YLKYVEARLGDRTLYADEILKDGFCLNMIDTPLGPLKVVTNLQEAVWDADIVINGLPSTE 60
           YLKYVEARLGDR L+ADEILKDGFCLNMIDTPL P+KVVTNLQEAVWDADIVINGLPSTE
Sbjct: 113 YLKYVEARLGDRVLHADEILKDGFCLNMIDTPLCPMKVVTNLQEAVWDADIVINGLPSTE 172

Query: 61  TLEVFEEISRYWKERITVPVIISLAKGVEAELEPEPRVITPTQMINRATGIPMENILYLG 120
           T EVFEEIS+YWKERITVPVIISLAKG+EAELEPEPR+ITPTQMINRATG+PMENILYLG
Sbjct: 173 TREVFEEISKYWKERITVPVIISLAKGIEAELEPEPRIITPTQMINRATGVPMENILYLG 232

Query: 121 GPNIASEIYNKEYANARICGAEKWRKPLAMFLRQPHFIVWDNGDLVTHELMGGLKNVYAI 180
           GPNIASEIYNKEYANARICGAEKWRKPLA FLRQPHFIVWDNGDL+THE+MGGLKN YAI
Sbjct: 233 GPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNGDLITHEVMGGLKNAYAI 292

Query: 181 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 240
           GAGMVAALTNESATSKSVYFAHCTSEMIFITHLL+E+PEKL+GPLLADTYVTLLKGRNAW
Sbjct: 293 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLSEDPEKLSGPLLADTYVTLLKGRNAW 352

Query: 241 YGQHLAKGDLNLDMGDSIKGKGMIQGVSAVKAFYELLSQSCLSVLHPEENKPVAPVEICP 300
           YGQ LA+G+L+L+MGDSIKGKGMIQG+SAVKAFYELLSQSCLS+LH EENKPVAPVE+CP
Sbjct: 353 YGQKLAEGELSLEMGDSIKGKGMIQGISAVKAFYELLSQSCLSILHSEENKPVAPVELCP 412

Query: 301 ILKMLYRILITREFSAQAILQALRDETMNDPRDRIEIAQSHVFYRPSLLGQEP 353
           ILK LY ILI RE S+QAILQALRD+TMNDPRDRI +AQ+H FYRPSLLGQ+P
Sbjct: 413 ILKTLYNILIAREASSQAILQALRDQTMNDPRDRIAMAQTHAFYRPSLLGQQP 465


>GSVIVT01033233001 assembled CDS
          Length = 463

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/351 (89%), Positives = 331/351 (94%)

Query: 1   YLKYVEARLGDRTLYADEILKDGFCLNMIDTPLGPLKVVTNLQEAVWDADIVINGLPSTE 60
           YLKYVEARLGDRTL ADEILKDGFCLNMI TPL PLKVVTNLQEAVWDADIV+NGLPSTE
Sbjct: 112 YLKYVEARLGDRTLLADEILKDGFCLNMIHTPLCPLKVVTNLQEAVWDADIVVNGLPSTE 171

Query: 61  TLEVFEEISRYWKERITVPVIISLAKGVEAELEPEPRVITPTQMINRATGIPMENILYLG 120
           T EVFEEI+ YWKERITVP+IISL+KG+EA LEP P +ITPTQMINRATG+ MENILYLG
Sbjct: 172 TREVFEEINHYWKERITVPIIISLSKGIEAALEPLPHIITPTQMINRATGVAMENILYLG 231

Query: 121 GPNIASEIYNKEYANARICGAEKWRKPLAMFLRQPHFIVWDNGDLVTHELMGGLKNVYAI 180
           GPNIASEIYNKEYANARICGAEKWRKPLA FLRQPHFIVWDN DLVTHE+MGGLKNVYAI
Sbjct: 232 GPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAI 291

Query: 181 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 240
           GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW
Sbjct: 292 GAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAW 351

Query: 241 YGQHLAKGDLNLDMGDSIKGKGMIQGVSAVKAFYELLSQSCLSVLHPEENKPVAPVEICP 300
           YGQ LAKG+L+LDMGDSI GKGMIQGVSAV AFYELLSQS LSVLHPEENK VAPVE+CP
Sbjct: 352 YGQMLAKGELSLDMGDSISGKGMIQGVSAVGAFYELLSQSSLSVLHPEENKHVAPVELCP 411

Query: 301 ILKMLYRILITREFSAQAILQALRDETMNDPRDRIEIAQSHVFYRPSLLGQ 351
           ILK LYRILITRE ++Q ILQALRDET+NDPR+RIEIAQ+H FYRPSLLGQ
Sbjct: 412 ILKTLYRILITRELASQGILQALRDETLNDPRERIEIAQTHAFYRPSLLGQ 462


>GSVIVT01003989001 assembled CDS
          Length = 381

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 114/252 (45%), Gaps = 28/252 (11%)

Query: 41  NLQEAVWDADIVINGLPSTETLEVFEEISRYWKERITVPV-IISLAKGVEAELEPEPRVI 99
           +L+ AV DA +++   P     +  E I +    +I      ISL KG+E ++E  P +I
Sbjct: 99  DLEHAVKDATMLVFVTPH----QFMEGICKRLVGKIRGDAEAISLIKGMEVKMEG-PCMI 153

Query: 100 TPTQMINRATGIPMENILYLGGPNIASEIYNKEYANARICG------AEKWRKPLAMFLR 153
           +   +I    GI   N   L G NIA+EI  ++++ A +        AE+W +       
Sbjct: 154 ST--LITDLLGI---NCCVLMGANIANEIAVEKFSEATVGYRENRDIAERWVR----LFS 204

Query: 154 QPHFIVWDNGDLVTHELMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHL 213
            P+F+V    D+   EL G LKNV AI AG V  L   + T K+        EM   + L
Sbjct: 205 TPYFMVSAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNT-KAAIMRIGLREMKAFSKL 263

Query: 214 L---AEEPEKLAGPLLADTYVTLLKGRNAWYGQHLAK--GDLNLDMGDSIKGKGM-IQGV 267
           L     +        +AD   T L GRN    +  A+  G  + D  ++   +G  +QGV
Sbjct: 264 LFSSVRDSTFFESCGIADLITTCLGGRNRKVAEAFARNGGKRSFDELEAEMLQGQKLQGV 323

Query: 268 SAVKAFYELLSQ 279
           S  +  YE+LS 
Sbjct: 324 STAREVYEVLSH 335


>GSVIVT01032665001 assembled CDS
          Length = 1241

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 21/245 (8%)

Query: 39  VTNLQEAVWDADIVINGLPSTETLEVFEEISRYWKERITVPVIISLAKGVEAELEPEPRV 98
            T+ + A+  AD  ++ +P   +    E I+       T+P  ISL+KG+E       R+
Sbjct: 143 TTDARAALLGADYCLHAVPVQFSSSFLEGIADSVDP--TLP-FISLSKGLELN---TFRM 196

Query: 99  ITPTQMINRATGIPMENILYLGGPNIASEIYNKEYANARICGAE--KWRKPLAMFLRQPH 156
           ++  Q+I +A G P +  + L GP+ A E+ NK    A +  ++  K        L   H
Sbjct: 197 MS--QIIPQALGNPRQPFIALSGPSFALELMNK-LPTAMVVASKDKKLANATQQLLASSH 253

Query: 157 FIVWDNGDLVTHELMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAE 216
             +  + D+   E+ G LKNV AI AG+V  + N    S +   A   SE+ ++   +  
Sbjct: 254 LRISTSSDVTGVEIAGALKNVLAIAAGIVEGM-NLGNNSMAALVAQGCSEIRWLATKMGA 312

Query: 217 EPEKL-----AGPLLADTYVTLLKGRNAWYGQHLAKGDLNLDMGDSIKGKGMIQGVSAVK 271
           +   +      G ++   +V L   RN   G  L  G+   D+  S+    + +GVS   
Sbjct: 313 KSTTIMGLSGTGDIMLTCFVNL--SRNKTVGIRLGSGEKLDDILGSM--NQVAEGVSTAG 368

Query: 272 AFYEL 276
           A   L
Sbjct: 369 AVIAL 373