Jatropha Genome Database

JcCB0293391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293391.10 - phase: 0 /partial
         (347 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024251001 assembled CDS                                       213   9e-56
GSVIVT01028303001 assembled CDS                                        98   6e-21

>GSVIVT01024251001 assembled CDS
          Length = 458

 Score =  213 bits (542), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 150/356 (42%), Positives = 192/356 (53%), Gaps = 50/356 (14%)

Query: 12  RKFSYGHLAQLKYLLHEAIQIDKILVHDKKTLCMKPEMEITLVFNEIEGHHEQSDFIALH 71
           RKFSY HLAQ+KY+L E +QID IL+HD K+LCMKP+M+I+L+F+ IEGH E+S F+AL 
Sbjct: 30  RKFSYRHLAQIKYILPEVVQIDYILIHDVKSLCMKPDMKISLLFDVIEGHQEKSTFMALR 89

Query: 72  QLFASRLTNYFTVHPEACDIPEAIL-------------PDPFNQSKRTAFGGEVSDIPEV 118
           Q+FA RL ++F +HPE   I  A+L              D F  +    FG +  DIPE 
Sbjct: 90  QVFAYRLLDFFNIHPEV--IAAALLLLVTYRWHVTIFSQDLFELNSVLFFGEQGCDIPEA 147

Query: 119 KLPEPVSQ-SQTFATEQLLANASTEDLPTTVESEPPSKSSHMHPSFSRHFSEK-IITEKD 176
            LPEP +Q +Q    + L  ++S E  PT+ E E  + S H++PSF RHFSEK ++ E  
Sbjct: 148 ILPEPFNQRTQNIIPKSLPVDSSIESQPTS-EVELLANSCHLNPSFRRHFSEKAVVAETG 206

Query: 177 KTQXXXXXXXXXXXXXNMKNQDTEISKTTEHPDPSSKSDSETNLNTKYEQGKESPGTNST 236
           KTQ                         +  P  SS SD  TN   K EQ KES    S 
Sbjct: 207 KTQ----------------------LLASLVPLLSSSSDIVTNKEIKSEQHKESSELYSE 244

Query: 237 STTIHPILVQAINPQFSIDNNACGSPMWKLASSADNLMVETPAQSTPKRATPLSDDNHXX 296
           ST I P  V  I PQ S+ ++AC SP  K    +D LMVETPAQ TPKR+ P S DN   
Sbjct: 245 STIIKPP-VGLICPQSSVSSSACESPYLKHPMVSDCLMVETPAQLTPKRSMP-SCDNKLK 302

Query: 297 XXXXXXXXXXCTAAKRSLDFSLLEGNESA--------CCEFLPDNISQTVDGSSAI 344
                         KRSLDFS LEG+ES         C + + D +SQTV+    +
Sbjct: 303 TVTRQMGTSCHMPTKRSLDFSCLEGDESVLNTLDEPECHKVIHDTLSQTVEAKGQV 358


>GSVIVT01028303001 assembled CDS
          Length = 618

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 69/103 (66%)

Query: 12  RKFSYGHLAQLKYLLHEAIQIDKILVHDKKTLCMKPEMEITLVFNEIEGHHEQSDFIALH 71
           R+FS+G+LAQLKY+L EAI I K+L+ D++T CMKP++ ITL  + IE    +S    L 
Sbjct: 225 RRFSHGNLAQLKYILPEAIVIKKVLMLDERTSCMKPDLLITLDVDGIENSKLESGNSHLR 284

Query: 72  QLFASRLTNYFTVHPEACDIPEAILPDPFNQSKRTAFGGEVSD 114
           ++F +RL ++   HPE  +IPE  LP+PF+QSK+      + D
Sbjct: 285 KIFRARLLDFAKAHPEGDEIPEETLPEPFSQSKQDLHSNMIKD 327