Jatropha Genome Database

JcCB0292291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0292291.10 + phase: 1 /pseudo/partial
         (439 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037231001 assembled CDS                                       445   e-125
GSVIVT01031411001 assembled CDS                                       229   2e-60
GSVIVT01014219001 assembled CDS                                        64   1e-10
GSVIVT01031451001 assembled CDS                                        60   3e-09
GSVIVT01031452001 assembled CDS                                        59   3e-09
GSVIVT01024716001 assembled CDS                                        58   8e-09
GSVIVT01017972001 assembled CDS                                        57   2e-08
GSVIVT01001168001 assembled CDS                                        56   4e-08
GSVIVT01012117001 assembled CDS                                        56   4e-08
GSVIVT01025526001 assembled CDS                                        55   6e-08
GSVIVT01033711001 assembled CDS                                        53   3e-07
GSVIVT01024715001 assembled CDS                                        49   4e-06

>GSVIVT01037231001 assembled CDS
          Length = 1805

 Score =  445 bits (1144), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/322 (67%), Positives = 254/322 (78%)

Query: 1   SPAVSALTEEKPMKSCHEWPREPVVLPPKAQLPPSSQNLDLSGISISDFFSVYACLRXXX 60
           S AVS ++E KP+ S H    + + LPPK QLPPSSQNL+L GI I DFFSVYA LR   
Sbjct: 341 SAAVSLVSEGKPIISGHAGIEDCIGLPPKLQLPPSSQNLNLDGIPIFDFFSVYAFLRSFS 400

Query: 61  XXXXXXXXXXXXXVAALKCNSPSALFDCIHVSVLQTLRKHLECLSNEGSESASNCLRSLD 120
                        V AL+CN  + LFD +HVS+LQTLRKHLE LS+EGS+SAS+CLR L+
Sbjct: 401 TLLYLSPFELEDFVEALRCNFSNPLFDSVHVSLLQTLRKHLEFLSDEGSQSASSCLRCLN 460

Query: 121 WDLLDLNTWPVFMVEYLLIHGSDLKPGFDLTLLKLLKSDYYKQSVSVKVEILRCLCDDMI 180
           W LLD  TWPVFM EYLLIHGS LKPGFD + LKL  +DY K+ V+VKVEILRCLCDD+I
Sbjct: 461 WGLLDSVTWPVFMAEYLLIHGSGLKPGFDFSCLKLFDNDYCKRPVAVKVEILRCLCDDVI 520

Query: 181 EVEAIRSELNRRSSGSEFDLDFDRNTTIGALKKKRAGMDLSGGSCITEDAVDDSTDWNSD 240
           EVEA+RSEL+RRS  +E D++F+RN  I   KK+RA MD+SGGSC+ E+ VD+  DWNSD
Sbjct: 521 EVEALRSELSRRSLAAEPDMEFNRNVNIEICKKRRAMMDVSGGSCLAEEVVDEINDWNSD 580

Query: 241 ECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAIDRHKPWMKPRKSLRG 300
           ECCLCKMDG+LICCDGCPAAYHS+CVGVA+D LP+GDW+CPECAID+ KPWMK RKSLRG
Sbjct: 581 ECCLCKMDGNLICCDGCPAAYHSRCVGVASDLLPDGDWYCPECAIDKDKPWMKQRKSLRG 640

Query: 301 AELFGVDPYGRLYFSSCGYLLV 322
           AEL GVDP+GRLYFSS GYLLV
Sbjct: 641 AELLGVDPHGRLYFSSYGYLLV 662


>GSVIVT01031411001 assembled CDS
          Length = 1382

 Score =  229 bits (585), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/298 (41%), Positives = 170/298 (57%), Gaps = 22/298 (7%)

Query: 28  PKAQLPPSSQNLDLSGISISDFFSVYACLRXXXXXXXXXXXXXXXXVAALKCNSPSALFD 87
           P  QLPPSS N+ +    +S  FSVY  LR                V +L C  P+ L D
Sbjct: 3   PPPQLPPSSGNIGVPEEYVSHLFSVYGFLRSFSIRLFLSPFALDDLVGSLNCTVPNTLLD 62

Query: 88  CIHVSVLQTLRKHLECLSNEGSESASNCLRSLDWDLLDLNTWPVFMVEYLLIHGSDLKPG 147
            IHV++L+ +R+HLE LS+ G E AS CL  +DW L+D  TWPV++V+YL I G     G
Sbjct: 63  AIHVALLRVVRRHLEALSSSGLELASKCLWCIDWSLVDTLTWPVYLVQYLTIMG--YTKG 120

Query: 148 FDLT--LLKLLKSDYYKQSVSVKVEILRCLCDDMIEVEAIRSELNRRSSGSEFDLDFDRN 205
            +L      +L  +YY  S   K+ IL+ LCDD+++ E +R+E++ R   SE  +D D  
Sbjct: 121 LELKGFYADVLDREYYTLSAGRKLIILKILCDDVLDSEELRAEIDMREE-SEIGIDPDS- 178

Query: 206 TTIGALKKKRAGMDLSGGSCITEDAVDDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKC 265
                        D      I E    D  D N DEC LC MDG+L+CCDGCP+ YHS+C
Sbjct: 179 -------------DQEAMQIIAET---DDQDVNGDECRLCGMDGTLLCCDGCPSVYHSRC 222

Query: 266 VGVANDSLPEGDWFCPECAIDRHKPWMKPRKSLRGAELFGVDPYGRLYFSSCGYLLVL 323
           +GV+   +P+G WFCPEC ID+  P +    SLRGAE+FG+D + ++Y  +C +LLVL
Sbjct: 223 IGVSKMFIPDGPWFCPECTIDKIGPTITVGTSLRGAEVFGIDAFEQVYLGTCNHLLVL 280


>GSVIVT01014219001 assembled CDS
          Length = 1300

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 233 DSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
           D  D N D C LC   G LICCD CP+ +H  C+      LPEG+W+CP C 
Sbjct: 864 DEIDQNDDSCGLCGDGGELICCDNCPSTFHQACLSAK--ELPEGNWYCPNCT 913


>GSVIVT01031451001 assembled CDS
          Length = 824

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 238 NSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA--IDRHKPWMKPR 295
           N D C +C   G+L+CCDGCP  +H +CV +AN  +P+G WFC  C   + + K      
Sbjct: 464 NDDLCSICLDGGNLLCCDGCPRVFHKECVSLAN--IPKGKWFCKFCNNMLQKEKFVEHNA 521

Query: 296 KSLRGAELFGVDP 308
            ++    + GVDP
Sbjct: 522 NAVAAGRVAGVDP 534


>GSVIVT01031452001 assembled CDS
          Length = 772

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 232 DDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC--AIDRHK 289
           + S + N + C +C   G+L+CCDGCP  +H +CV + N  +P+G WFC  C   + + K
Sbjct: 545 EPSINTNDEICSICLDGGTLLCCDGCPRVFHKECVSLEN--IPKGKWFCKFCLNTLQKGK 602

Query: 290 PWMKPRKSLRGAELFGVDP 308
              +   ++    + GVDP
Sbjct: 603 FVERNANAVAAGRMGGVDP 621


>GSVIVT01024716001 assembled CDS
          Length = 687

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 238 NSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
           N D C +C   G L+ CD CP+ +H  C+G+    LPEGDWFCP C
Sbjct: 350 NDDICSVCHYGGDLVLCDQCPSCFHQSCLGLK--ELPEGDWFCPSC 393


>GSVIVT01017972001 assembled CDS
          Length = 1264

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 242 CCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
           C +C   G LICCDGCP+ +H  C+ +    LP GDW CP C 
Sbjct: 502 CGICGDGGDLICCDGCPSTFHQSCLNIQ--MLPSGDWHCPNCT 542


>GSVIVT01001168001 assembled CDS
          Length = 912

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 236 DWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA 284
           D N D C +C   G LICCDGCP+ +H  C+ +     P GDW C  C+
Sbjct: 246 DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDI--QKFPSGDWHCIYCS 292


>GSVIVT01012117001 assembled CDS
          Length = 1638

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 241 ECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
           EC +C + G+L+CCD CP  YH +C+      +P G W CP+C
Sbjct: 77  ECVICDLGGNLLCCDSCPRTYHLQCLNPPLKRIPNGKWQCPKC 119


>GSVIVT01025526001 assembled CDS
          Length = 841

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 221 SGGSCITEDAVDDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFC 280
           +G +C T D+         D C LC   G LI CDGCP A+H  C+ +    LPEGDW C
Sbjct: 487 NGQNCTTGDS--------DDMCTLCGDGGDLILCDGCPRAFHPACLEL--QCLPEGDWRC 536

Query: 281 PECAIDRHKPWMKPRKSLR 299
           P C ++   P  K  + +R
Sbjct: 537 P-CCVENFCPDRKVARPIR 554


>GSVIVT01033711001 assembled CDS
          Length = 879

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 238 NSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECA--IDRHKPWMKPR 295
           N D C +C   G+L+ CDGCP A+H  C  +   S+P+ DW+C  C     R K      
Sbjct: 511 NDDLCSICGDGGNLLLCDGCPRAFHRVCASLP--SIPQDDWYCRYCQNMFQREKFVEHNA 568

Query: 296 KSLRGAELFGVDP 308
            ++    + GVDP
Sbjct: 569 NAVAAGRVSGVDP 581


>GSVIVT01024715001 assembled CDS
          Length = 994

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 238 NSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
           N   C +C   G L+ CD CP+++H  C+G+       GDWFCP C
Sbjct: 665 NDHICSVCHYGGDLVLCDHCPSSFHKSCLGLKVGCF--GDWFCPSC 708