Jatropha Genome Database

JcCB0290351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0290351.10 + phase: 0 /pseudo
         (476 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035630001 assembled CDS                                       178   6e-45
GSVIVT01015329001 assembled CDS                                       152   3e-37
GSVIVT01015330001 assembled CDS                                       132   3e-31
GSVIVT01006274001 assembled CDS                                       112   5e-25
GSVIVT01030133001 assembled CDS                                        62   5e-10
GSVIVT01030134001 assembled CDS                                        60   2e-09
GSVIVT01033738001 assembled CDS                                        51   1e-06
GSVIVT01035880001 assembled CDS                                        51   1e-06
GSVIVT01012806001 assembled CDS                                        50   2e-06

>GSVIVT01035630001 assembled CDS
          Length = 618

 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 208/480 (43%), Gaps = 126/480 (26%)

Query: 1   MGQEFRYWCPMETRRLLWLVGVMFVVIMIFQLLEVPAGNILSFISSVHNDQIAENGNLLR 60
           MG +FRY   +E R LLWL+G +F V+ + Q  E+P G++LS + S  +       +L  
Sbjct: 1   MGHKFRYLWQVEARHLLWLIGTVFSVVFVVQYFELPYGDVLSSLFSAGDIPAPGKTSLPS 60

Query: 61  DDALSKSDMVSNMTLLNDLNSTYADDVHERAGKYGKEKDAGVNYDFESEASVVSNHSSGI 120
            D+ +   M  N                          + G   DF S  +   + S G+
Sbjct: 61  SDSFNAETMEGN--------------------------NEGPKNDFASVMNGALDKSFGL 94

Query: 121 DSHDKESSLHQVLQPNGTLNPINNFGEISVSDETGHRFSRENMSLPLENTRTSDANNDLV 180
           D  +K          N T+  +NN G  S         S+   SL LEN  T+D+N    
Sbjct: 95  DEDNK----------NVTVEKVNNSGNRSALKNA----SKHESSLYLENI-TADSN---- 135

Query: 181 SEASIGMNPEIXXXXXXXXXXXXXXXXSSLQPSIHSAVDTASNPGNSSEPDETGKSFSDE 240
             +S+G                                                    ++
Sbjct: 136 --SSLG-------------------------------------------------KIQED 144

Query: 241 NSIFLSENTRISNSGIASIVPVLPPENSSPN-----------VTFPRSEESSIRTPVAHI 289
           +   LS+ +  S  G+ S +P LP   SS N           +T P  E SS+    AH 
Sbjct: 145 DMALLSQRSERSGVGLISPLPALPQIISSSNTTSLTNLDPHPITLP-PERSSVEEDAAH- 202

Query: 290 DSNTSSLDKDSMSNSDNHGKSGKLQNNIAKLNENSPVTTNFELKKMPKLPISGVISVSEM 349
                +L+KD  + +         Q ++   N +S      E +  P+LP   V ++SEM
Sbjct: 203 -----TLNKDEKAETS--------QKDLTLSNRSSISVPALETR--PELP--AVTTISEM 245

Query: 350 NXXXXXXXXXXXXXXXXXXXAVDQELLHAKSLIENAPIVENDAVLYTPLYWNFSKFKRSY 409
           N                   AVD+ELL+AKS IENAPI++ND  L+  LY N S FKRSY
Sbjct: 246 NDLLVQSRASSRSMKPRWSSAVDKELLYAKSQIENAPIIKNDPGLHASLYRNVSVFKRSY 305

Query: 410 ELMENMLKVYIYKEGEKPILHQPVLKGIYASEGWFMKHLEASKKFVTKKPRKDPPVLLTF 469
           ELMEN LKVY Y+EGE+P+ HQP +KGIYASEGWFMK ++A+KKFVTK  RK     L F
Sbjct: 306 ELMENTLKVYTYREGERPVFHQPPIKGIYASEGWFMKLMQANKKFVTKNGRKAHLFYLPF 365


>GSVIVT01015329001 assembled CDS
          Length = 665

 Score =  152 bits (385), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 131/223 (58%), Gaps = 12/223 (5%)

Query: 240 ENSIFLSENTRISNSGIASIVPVLPPENSSPNVTFPRSEESSIRTPVAHIDSNTSSLDKD 299
           ENS  L +++ + +  I S V ++ P N         S ++ ++   +   S   SL+K+
Sbjct: 228 ENSSDLKKDSEMRH--IGSAVHIVKPPNEGI------STDNIVKADASLTPSTPGSLEKE 279

Query: 300 SMSNSDNHGKSGKLQNNIAKLNENSPVTTNFELKKMP-KLPISGVISVSEMNXXXXXXXX 358
            +S  +N      LQ+++A LN NS +T+N   KKM  ++P   V S+ +MN        
Sbjct: 280 ILSKDEN---LLVLQSDLADLNNNSAMTSNPGRKKMQSEMPPKSVTSIYDMNRRLVRHRA 336

Query: 359 XXXXXXXXXXXAVDQELLHAKSLIENAPIVENDAVLYTPLYWNFSKFKRSYELMENMLKV 418
                        DQE+L AK  I+NAP V+ND  L+ PL+ N S FKRSYELME +LKV
Sbjct: 337 SSRAMRPRWASPRDQEMLAAKLQIQNAPRVKNDPELHAPLFRNVSMFKRSYELMERILKV 396

Query: 419 YIYKEGEKPILHQPVLKGIYASEGWFMKHLEASKKFVTKKPRK 461
           Y+YK+GEKPI HQP+LKG+YASEGWFMK +E +K FV K PR+
Sbjct: 397 YVYKDGEKPIFHQPILKGLYASEGWFMKLMERNKHFVVKDPRQ 439


>GSVIVT01015330001 assembled CDS
          Length = 665

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 2/175 (1%)

Query: 289 IDSNTSSLDKDSMSNSDNHGKSGKLQNNIAKLNENSPVTTNFELKKMPKLPISGV--ISV 346
           +D+++ + D  ++SN  +  ++ K +N       + P+  N+ +  +      G+   ++
Sbjct: 207 LDADSRTSDLSTVSNVKHVMEAEKDKNTNLLQTVSVPLDNNYTIADISITRRRGMKPTTI 266

Query: 347 SEMNXXXXXXXXXXXXXXXXXXXAVDQELLHAKSLIENAPIVENDAVLYTPLYWNFSKFK 406
           S+MN                     D+ELL A+S I+NAP++ N   LY  +Y N S FK
Sbjct: 267 SKMNLLLLQSAVSSYSMRPRWSSPRDRELLSARSEIQNAPVIRNTPGLYASVYRNVSMFK 326

Query: 407 RSYELMENMLKVYIYKEGEKPILHQPVLKGIYASEGWFMKHLEASKKFVTKKPRK 461
           RSYELME +LK+YIY+EGEKPI HQP L+GIYASEGWFMK +E +K+FV + PRK
Sbjct: 327 RSYELMERVLKIYIYREGEKPIFHQPRLRGIYASEGWFMKLIEGNKRFVVRDPRK 381


>GSVIVT01006274001 assembled CDS
          Length = 585

 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 66/90 (73%)

Query: 372 DQELLHAKSLIENAPIVENDAVLYTPLYWNFSKFKRSYELMENMLKVYIYKEGEKPILHQ 431
           D+ LL AK  I+N   V +D  LY  L+ N S FKRSYELME +LKVYIY +G +PI H 
Sbjct: 159 DEALLFAKREIQNVSTVTDDPELYASLFHNVSVFKRSYELMETILKVYIYPDGARPIFHA 218

Query: 432 PVLKGIYASEGWFMKHLEASKKFVTKKPRK 461
           P L+GIYASEGWFMK +E +++FVT+ P+K
Sbjct: 219 PHLRGIYASEGWFMKLMEENRQFVTRDPKK 248


>GSVIVT01030133001 assembled CDS
          Length = 634

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 10/108 (9%)

Query: 371 VDQELLHAKSLIE---------NAPIVENDAVLYTPLYWNFSKFKRSYELMENMLKVYIY 421
           V+  L  A++LI          +AP V  D V    +Y N + F RSY LME + K++IY
Sbjct: 256 VEAGLARARALIREGTTNWSSISAP-VGADYVPQGDIYRNATAFHRSYLLMEKLFKIFIY 314

Query: 422 KEGEKPILHQPVLKGIYASEGWFMKHLEASKKFVTKKPRKDPPVLLTF 469
           KEGE P+ H    K IY+ EG F   +E    F T+ P +     L F
Sbjct: 315 KEGEPPLFHNGPCKSIYSIEGVFFSLMEGDTHFRTQDPDEAHVYFLPF 362


>GSVIVT01030134001 assembled CDS
          Length = 416

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query: 391 DAVLYTPLYWNFSKFKRSYELMENMLKVYIYKEGEKPILHQPVLKGIYASEGWFMKHLEA 450
           D V   P+Y N + F RSY  ME + K+Y+Y+EGE P+ H    K IY++EG F+  +E 
Sbjct: 64  DYVPQGPIYRNANAFHRSYLEMEKLFKIYVYEEGEPPMFHNGPCKSIYSTEGRFIHEMEK 123

Query: 451 SKKFVTKKPRKDPPVLLTF 469
              + T  P +     L F
Sbjct: 124 GSVYRTTDPDQALLYFLPF 142


>GSVIVT01033738001 assembled CDS
          Length = 337

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 31/58 (53%)

Query: 412 MENMLKVYIYKEGEKPILHQPVLKGIYASEGWFMKHLEASKKFVTKKPRKDPPVLLTF 469
           ME  LKVY+Y EGE P+ H    K IY+ EG F+  +E    F TK P K     L F
Sbjct: 1   MEKQLKVYVYDEGEPPLFHNGPCKSIYSMEGNFIHKMEMDSHFRTKDPEKAHLFFLPF 58


>GSVIVT01035880001 assembled CDS
          Length = 478

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 389 ENDAVLYTPLYWNFSKFKRSYELMENMLKVYIYKEGEKPILHQPVLKGIYASEGWFMKHL 448
           +N+ V    +Y N   F +SY  ME  LKVY+Y+EGE P++H    K IY  EG F+  +
Sbjct: 122 DNNEVPTGDVYRNAGAFYQSYVEMEKRLKVYVYEEGEVPMIHDGPCKDIYTIEGRFIHEI 181

Query: 449 E-ASKKFVTKKPRKDPPVLLTF 469
           E    KF T+   +     + F
Sbjct: 182 EHGDGKFRTRDAERAHVYFMPF 203


>GSVIVT01012806001 assembled CDS
          Length = 862

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 398 LYWNFSKFKRSYELMENMLKVYIYKEGEKPILHQPVLKGIYASEGWFMKHLEASK-KFVT 456
           +Y N   F +S+  ME   K++ Y+EG++P++H     GIYA EG FM  +E+ K  F+ 
Sbjct: 516 VYRNPYAFHQSHIEMEKRFKIWAYREGDQPLMHDGPSNGIYAIEGQFMDDIESGKSHFLA 575

Query: 457 KKP 459
           ++P
Sbjct: 576 RRP 578