Jatropha Genome Database

JcCB0289761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0289761.10 - phase: 0 
         (189 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029873001 assembled CDS                                       111   2e-25
GSVIVT01032870001 assembled CDS                                        49   1e-06

>GSVIVT01029873001 assembled CDS
          Length = 221

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 88/136 (64%), Gaps = 9/136 (6%)

Query: 58  DLNLDHLNSIFVAVGFPKRDPERIKLALENTNSLLWI---------EHKKTQKPVAFARA 108
           D+++  L ++   VG+P+R   ++  AL+N+  +  +         E  + +K +  ARA
Sbjct: 85  DVDVYDLQALCDKVGWPRRPLSKLSAALKNSYMVATLHSLRKSPGEERNEQKKLIGMARA 144

Query: 109 TGDNVFNAIIWDVVVDPSYQGIGLGKAVMERLVDELLEKGIINIALYSEPRVLGFYRPLG 168
           T D+ FNA IWDV+VDPSYQG GLGKA++E+ +  LL++ I NI L+++ +V+ FYR LG
Sbjct: 145 TSDHAFNATIWDVLVDPSYQGQGLGKALVEKTIRALLQRDIGNITLFADSQVVEFYRNLG 204

Query: 169 FVADPDGIRGMVYSKK 184
           F  DP+GI+GM +  +
Sbjct: 205 FEPDPEGIKGMFWHPR 220


>GSVIVT01032870001 assembled CDS
          Length = 274

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%)

Query: 103 VAFARATGDNVFNAIIWDVVVDPSYQGIGLGKAVMERLVDELLEKGIINIALYSEPRVLG 162
           V F RA  D    A I+D++V PS + +G+G+ +++R+V  L  + I +IA         
Sbjct: 163 VGFGRAVSDQGLTASIYDIMVMPSLRRMGIGRMIVKRIVRILTSRDIFDIAALCAENERL 222

Query: 163 FYRPLGFVADPDGIRGMVYSK 183
           F++  GF  D  G   M+Y++
Sbjct: 223 FFQACGFGDDILGSTTMMYTR 243