Jatropha Genome Database

JcCB0288881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0288881.10 - phase: 0 /partial
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018976001 assembled CDS                                       129   5e-31
GSVIVT01021924001 assembled CDS                                        51   2e-07

>GSVIVT01018976001 assembled CDS
          Length = 670

 Score =  129 bits (325), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/67 (88%), Positives = 61/67 (91%)

Query: 93  GSCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQ 152
           G+CQGVIALNMEDGTLHRF+AASTILATGGYGR YFSATSAHTCTGDGNAMVARAGLPLQ
Sbjct: 254 GACQGVIALNMEDGTLHRFQAASTILATGGYGRTYFSATSAHTCTGDGNAMVARAGLPLQ 313

Query: 153 ILSLFNF 159
            L    F
Sbjct: 314 DLEFVQF 320


>GSVIVT01021924001 assembled CDS
          Length = 113

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 25/30 (83%)

Query: 92  SGSCQGVIALNMEDGTLHRFRAASTILATG 121
             +CQGVIALNM+DG LHRF+  STILATG
Sbjct: 24  ESACQGVIALNMKDGILHRFQVVSTILATG 53