Jatropha Genome Database

JcCB0288671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0288671.10 - phase: 0 /pseudo
         (255 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008841001 assembled CDS                                       287   3e-78
GSVIVT01019825001 assembled CDS                                       144   3e-35
GSVIVT01008825001 assembled CDS                                       144   5e-35
GSVIVT01022436001 assembled CDS                                        99   2e-21
GSVIVT01018933001 assembled CDS                                        54   6e-08
GSVIVT01026718001 assembled CDS                                        52   2e-07

>GSVIVT01008841001 assembled CDS
          Length = 360

 Score =  287 bits (735), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 146/196 (74%), Positives = 151/196 (77%), Gaps = 7/196 (3%)

Query: 1   MNEKESFMDIDGDENEDQKQNDSYETNKGKNVVVAGTPPDIKAVPWVEKYRPQSLADVAA 60
           M E  + MDID ++N   K       NKGK+VVV G PPD KA PWVEKYRPQSLADVAA
Sbjct: 1   MAEAVTVMDIDEEDNHLLK------ANKGKSVVVGG-PPDRKATPWVEKYRPQSLADVAA 53

Query: 61  HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 120
           HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG Q+HNMILELNASDDRG
Sbjct: 54  HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRG 113

Query: 121 IGVVRQQIXXXXXXXXXXXXXXXXXXXXXXXEADAMTKDAQFALRRVIEKYTKNTRFTLI 180
           I VVRQQI                       EADAMTKDAQFALRRVIEKYTKNTRF LI
Sbjct: 114 IDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALI 173

Query: 181 CNHVNKIIPALQSRCT 196
           CNHVNKIIPALQSRCT
Sbjct: 174 CNHVNKIIPALQSRCT 189


>GSVIVT01019825001 assembled CDS
          Length = 330

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 44  VPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 103
           +PWVEKYRP  +AD+  + D V  +  +  +  +P+L+L GPPGTGKT+++LA+A +L G
Sbjct: 12  MPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLG 71

Query: 104 AQYHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXXXXXXXXXXXEADAMTKDAQFA 163
           A Y   +LELNASDDRGI VVR +I                       EAD+MT  AQ A
Sbjct: 72  ANYREAVLELNASDDRGIDVVRNKI--KMFAQKKVTLPSGSHKIVILDEADSMTTGAQQA 129

Query: 164 LRRVIEKYTKNTRFTLICNHVNKIIPALQSRCTTV 198
           LRR +E Y+ +TRF L CN  +KII  +QSRC  V
Sbjct: 130 LRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIV 164


>GSVIVT01008825001 assembled CDS
          Length = 341

 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 95/158 (60%), Gaps = 6/158 (3%)

Query: 45  PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 104
           PWVEKYRP+ + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 105 Q-YHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXX-----XXXXXXXXXEADAMTK 158
           + Y + +LELNASDDRGI VVR +I                            EAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTE 129

Query: 159 DAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQSRCT 196
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC 
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 167


>GSVIVT01022436001 assembled CDS
          Length = 354

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 37/188 (19%)

Query: 46  WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 103
           WV+KYRP++L ++  H D+   + +L +E   PHLL YGPPG+GK + I+A+ R+++G  
Sbjct: 3   WVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFGPS 62

Query: 104 ---------------------------AQYHNMILELNASD----DRGIGVVRQQIXXXX 132
                                      +  H+M  ELN  D    DR I  V++ I    
Sbjct: 63  ADKVKVENKTWKIDAGTRTIDLELTTLSSTHHM--ELNPGDAGFQDRYI--VQEIIKEMA 118

Query: 133 XXXXXXXXXXXXXXXXXXXEADAMTKDAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQ 192
                              E D ++++AQ +LRR +EKY+ + R  L CN  +K+  A++
Sbjct: 119 KNRPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVR 178

Query: 193 SRCTTVSI 200
           SRC  + I
Sbjct: 179 SRCLNIRI 186


>GSVIVT01018933001 assembled CDS
          Length = 708

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 46  WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 105
           W +K+RP SL     H+     + +L S +  PH+L  GP G+GK +  +A+ R++YG  
Sbjct: 357 WADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYGDA 416

Query: 106 YHNMILELNA 115
             N+  EL +
Sbjct: 417 SWNISHELRS 426


>GSVIVT01026718001 assembled CDS
          Length = 530

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 17/179 (9%)

Query: 28  KGKNVVVAGTPPDIKAVPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPG 87
           KGKN          K   W +KYRP++L+D   +RD    +  L    + PH +  G  G
Sbjct: 225 KGKN----------KDFTWADKYRPKALSDFICNRDKAVQLQDLVKVEQHPHFIFEGLAG 274

Query: 88  TGKTSTILAVARKLYG---AQYHNMILE--LNASDDRGIGVVRQQIXXXXXXXXXXXXXX 142
            GK + I A  R+++G    Q      E  L     R I  V  ++              
Sbjct: 275 VGKKTMISAFLREVFGHDRVQTREECKEFYLKGESIRSIR-VNVKVSCHHIESQQGCALL 333

Query: 143 XXXXXXXXXEADAMTKDAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQSRCTTVSIL 201
                    EA+ ++ +A    + +++KY  +      C+  +K+ P ++S CT V +L
Sbjct: 334 NIFTAIVLYEAEKLSTEALLYFKWLLDKYEGHNMVFFSCSDTSKLQP-IKSLCTMVQLL 391