Jatropha Genome Database

JcCB0287791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0287791.10 + phase: 0 /pseudo/partial
         (310 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013154001 assembled CDS                                        57   2e-08

>GSVIVT01013154001 assembled CDS
          Length = 547

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 20/137 (14%)

Query: 163 VDGIL-HSEKLGALPPVKENNLCQVVHNIGRKDGLGPLTPPRSPV-DMNSGGLPETRHHI 220
            DG L H++ +    P ++++  Q + N   K  + P TPPRSP  D+ +   PE  ++I
Sbjct: 370 FDGTLDHTQNISTTSPCRDHDGNQHI-NENCKSKIHPQTPPRSPSPDIYAEEPPEVSYNI 428

Query: 221 RRDHLKVENSRREHLENMENCKK-LKRGVRDQRHEAIRYISKNVPSARGIRLMAAM---- 275
            R HL+ +N           CKK L + + D R      + KN+P++R +RLMAAM    
Sbjct: 429 PRGHLRQKNQVA--------CKKPLNKALEDSRKREACKLCKNMPASRSMRLMAAMKGSQ 480

Query: 276 ----LPRNDKKRRLRSS 288
               L +   KRR+ SS
Sbjct: 481 SEGSLGKKKSKRRMESS 497