Jatropha Genome Database

JcCB0287701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0287701.10 - phase: 0 /partial/short
         (41 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017888001 assembled CDS                                        61   1e-10
GSVIVT01011108001 assembled CDS                                        57   2e-09

>GSVIVT01017888001 assembled CDS
          Length = 274

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 30/32 (93%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTTRWV 32
           PIT ALVY+GTTLKDLSDVTHGW+E ST+RW+
Sbjct: 173 PITLALVYIGTTLKDLSDVTHGWHEFSTSRWI 204


>GSVIVT01011108001 assembled CDS
          Length = 263

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTTRWVRAVLPFVL 40
           PITFA VY+GTTLKDLSD+ H WN+ ST+ W+   L FV+
Sbjct: 163 PITFAFVYIGTTLKDLSDIRHAWNDGSTSHWIFIALGFVV 202