Jatropha Genome Database

JcCB0286801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0286801.10 - phase: 0 /partial
         (218 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034266001 assembled CDS                                       149   1e-36

>GSVIVT01034266001 assembled CDS
          Length = 394

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 129/208 (62%), Gaps = 11/208 (5%)

Query: 1   VERERNLLNSKLIEFENLIRNPYVAPAKSALS-QSPFAGVTPPAIATSDQNNAPPLVSSF 59
           VERER+LLNSKLIEF++L+R PY AP  S L+ QSP     P A + + QNN PP  SSF
Sbjct: 180 VERERSLLNSKLIEFDSLLRKPYAAPPNSTLAIQSP--APNPDASSLTAQNNTPPSASSF 237

Query: 60  SQLGPSLNVESGTRPSSSSNNAFGQPNILSNSSQTSGSFGISNFAPANSGSISSQLPNQA 119
           SQL  S N+  GTRPS+ SNNAFGQ N +  SSQTSG+FG +N A  N+GS  SQLP Q 
Sbjct: 238 SQLSTSPNMGFGTRPSTPSNNAFGQSNSIQFSSQTSGAFGTNNLAFGNAGSFGSQLPVQM 297

Query: 120 SGNPFSSNVAGFSNSSAIINQSNPFDSSAVTKQVTNSSTAQHVIISNSPNLASNAVGQAT 179
            G+P  SN AGFS+++     S  F   A + Q+ + +  Q  I+S+     +N++  A 
Sbjct: 298 HGSPLPSNTAGFSHNNMSAG-SKAFSPPAASPQIISFANNQSPILSS----GTNSMFSAE 352

Query: 180 EHIHS-TNGMQKGAV--DASIWLKESWN 204
             +H+    MQ+     D SIWLKE WN
Sbjct: 353 STMHAQLEKMQRDNFSGDMSIWLKEEWN 380