Jatropha Genome Database

JcCB0285631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285631.20 - phase: 1 /pseudo/partial
         (90 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025527001 assembled CDS                                        71   1e-13

>GSVIVT01025527001 assembled CDS
          Length = 140

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 42/49 (85%)

Query: 42  RENMNAKYLDGWVIFVDPAKPREQRPPPSPVQEPTDTGYRTNKTIGWCG 90
           RE MNAK+LDGWVIFVDPAKPRE RPPP    E ++TG+RTNKTIGWCG
Sbjct: 92  REGMNAKFLDGWVIFVDPAKPREPRPPPQQEPESSETGFRTNKTIGWCG 140