Jatropha Genome Database

JcCB0285631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285631.10 - phase: 0 
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025529001 assembled CDS                                        78   7e-16

>GSVIVT01025529001 assembled CDS
          Length = 470

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 1  MYCCVPHYVSMKFPELSTSKIFSSF-SLTKRDFKVFAVASSMDETANYIPAAPIFIPEGP 59
          M+ CVPHY S+ FP+L+  +    F S  +R F++ A++SS+ E +NYI AAPIF+P+GP
Sbjct: 1  MFLCVPHYTSITFPQLNDGRKVLRFGSYQRRGFRILAMSSSVSEASNYITAAPIFLPDGP 60

Query: 60 WNQV 63
          W Q+
Sbjct: 61 WKQI 64