Jatropha Genome Database

JcCB0285141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285141.10 - phase: 0 /partial
         (412 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010170001 assembled CDS                                       239   2e-63
GSVIVT01005166001 assembled CDS                                       190   1e-48
GSVIVT01010171001 assembled CDS                                       174   7e-44
GSVIVT01019467001 assembled CDS                                       156   2e-38

>GSVIVT01010170001 assembled CDS
          Length = 202

 Score =  239 bits (611), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 126/135 (93%)

Query: 188 MVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELRQVFSEWNKGELMSFLIEITADIFGIRD 247
           MVHNGIEYGDMQLIAEAYDVLKSVGKL+NEELR VFSEWNKGEL+SFLIEITADIF I+D
Sbjct: 1   MVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRNVFSEWNKGELLSFLIEITADIFSIKD 60

Query: 248 DKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDGRFLSGLKEERIEAAKI 307
           DKGDG+LVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTIASSLD RFLSGLKEER+EAAK+
Sbjct: 61  DKGDGFLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKV 120

Query: 308 FKSSGVGDILADQVV 322
           FKSSG  +    +VV
Sbjct: 121 FKSSGFENSAWRRVV 135


>GSVIVT01005166001 assembled CDS
          Length = 645

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/111 (83%), Positives = 100/111 (90%), Gaps = 1/111 (0%)

Query: 84  VDQTIKTLSVYMEKGDCIIDGGNEWYENTERREKAMADLGLLYLGMGVSGGEEGARHGPS 143
           VD+ IKTLS Y+EKGD IIDG NE +ENTERREKAM +LGLLYLGMGVSGGEEG RHGPS
Sbjct: 41  VDRAIKTLSSYLEKGDFIIDGSNERHENTERREKAMVELGLLYLGMGVSGGEEGDRHGPS 100

Query: 144 LMPGGSFEAYKYIEDILLKVAAQVRDSGPCVTYIGKGGSGNFVKMV-HNGI 193
           LM GGSFEAYKY+ED LLKVAAQV +SGPCVTYIGKGGSGNFVKMV HNG+
Sbjct: 101 LMLGGSFEAYKYVEDTLLKVAAQVPNSGPCVTYIGKGGSGNFVKMVYHNGL 151


>GSVIVT01010171001 assembled CDS
          Length = 133

 Score =  174 bits (441), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 83/95 (87%), Positives = 88/95 (92%)

Query: 1   MAPLIRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVARAKQEGDLPLYGFRD 60
           MAP+ RIGL+GLAVMGQNLALNIAEKGFPISVYNRT SKVDETV RAKQEG+LPLYGF D
Sbjct: 16  MAPVSRIGLSGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHD 75

Query: 61  PESFVNSIQKPRVIIMLVKAGPPVDQTIKTLSVYM 95
           PESFVNSIQKPRVIIMLVKAG PVDQTIKTL  ++
Sbjct: 76  PESFVNSIQKPRVIIMLVKAGAPVDQTIKTLKPWL 110


>GSVIVT01019467001 assembled CDS
          Length = 1636

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 83/91 (91%)

Query: 322  VNKEKLIGDAGQALYASKICSYAQGMNLIRAKSAEKGWDLKLGELARIWKGGCIIRAVFL 381
            V+K++LI D  QALYASKICSYAQGMNL+RAKS EKGW+L  GELARIWKGGCIIRAVFL
Sbjct: 1431 VDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEKGWNLNFGELARIWKGGCIIRAVFL 1490

Query: 382  NRIKQAYDRNPDLPNLLVDPEFAREIIERQS 412
            +RIK+AY RNP+L +L+VDPEFARE+++RQ+
Sbjct: 1491 DRIKKAYQRNPNLASLIVDPEFAREMVQRQA 1521



 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 39/41 (95%)

Query: 123  GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 163
            G+LYLGMGVSGGEEGARHGPSLMPGGS++AY+ IEDI+ KV
Sbjct: 1384 GILYLGMGVSGGEEGARHGPSLMPGGSYQAYQNIEDIVKKV 1424