Jatropha Genome Database

JcCB0285121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285121.10 + phase: 1 /pseudo/partial
         (241 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025275001 assembled CDS                                       418   e-118
GSVIVT01018503001 assembled CDS                                        99   2e-21
GSVIVT01008990001 assembled CDS                                        81   5e-16
GSVIVT01018924001 assembled CDS                                        49   2e-06

>GSVIVT01025275001 assembled CDS
          Length = 658

 Score =  418 bits (1075), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/227 (90%), Positives = 215/227 (94%)

Query: 15  NLGEEENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKF 74
           NL  EENY+PAIAIVGRPNVGKSSILNAL+ EDRTIVSP+SGTTRDAIDTEF+GPDGQK+
Sbjct: 354 NLDGEENYVPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKY 413

Query: 75  RLIDTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERI 134
           RLIDTAGIRRRAAVASSGS TEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERI
Sbjct: 414 RLIDTAGIRRRAAVASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERI 473

Query: 135 EKEGKGCLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIID 194
           E+EGKGCLIVVNKWDTIPNKNQQTA YYEQDVREKLR L WAP+VYSTAIAG SV+KII 
Sbjct: 474 EREGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRVLGWAPIVYSTAIAGHSVDKIIV 533

Query: 195 AASAVEKERSRRLSTAILNQVVGEALAFKSPPRTRGGKRGRIYYCTQ 241
           AAS VEKERSRRLST+ILNQVV EALAFKSPPR RGGKRGR+YYCTQ
Sbjct: 534 AASTVEKERSRRLSTSILNQVVQEALAFKSPPRNRGGKRGRVYYCTQ 580



 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 24/178 (13%)

Query: 20  ENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAI-DTEFSGPDGQKFRLID 78
           ++ +P + IVGRPNVGKS++ N L+  ++ IV    G TRD +    F G    +F +ID
Sbjct: 184 DHLLPRVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWG--DYEFMVID 241

Query: 79  TAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKE- 137
           T G+          +++++    +A  AI  S V+  +++  A ++  D  IA+ + K  
Sbjct: 242 TGGVL---------TISKSQDNKQATAAIEESSVIIFLVDGQAGLSAADVEIADWLRKNY 292

Query: 138 -GKGCLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIID 194
             K  ++ VNK ++ P K    A+ +         +L + P+  S A++G    +++D
Sbjct: 293 SNKCIVLAVNKCES-PKKGIMQALEFW--------SLGFTPLPIS-AVSGTGTGELLD 340


>GSVIVT01018503001 assembled CDS
          Length = 739

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 120/210 (57%), Gaps = 20/210 (9%)

Query: 19  EENYIP-AIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLI 77
           EE+  P  +AIVGRPNVGKS++LN LL+E+R +V P +G TRD++  +F    G+   L+
Sbjct: 395 EESKSPLQLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQF-QGRTVYLV 453

Query: 78  DTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIE------AMACITEQDYRIA 131
           DTAG  +R       +   +LSV ++ ++I R+ VVALV++      A + +   +  IA
Sbjct: 454 DTAGWLQRTKQEKGPA---SLSVMQSRKSIMRAHVVALVLDAEEIANARSSMKHAEVVIA 510

Query: 132 ERIEKEGKGCLIVVNKWDTIPNKNQQTAMYYE-------QDVREKLRTLHWAPVVYSTAI 184
            R  +EG+G +++VNK D +  K ++ +  YE       ++++  +  +   PVV+ +A+
Sbjct: 511 RRAVEEGRGLVVIVNKMDLL--KGRKNSKLYEKVMEAVPEEIQMVIPQVTGIPVVFISAL 568

Query: 185 AGRSVEKIIDAASAVEKERSRRLSTAILNQ 214
            GR    ++       ++   RLSTA LN+
Sbjct: 569 EGRGRISVMRQVIDTYEKWCLRLSTARLNR 598



 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 21  NYIPAIAIVGRPNVGKSSILNALLREDRTIV--SPISGTTRDAIDTEFSGPDGQKFRLID 78
           N +P + +VGRPNVGKS++ N L+R    +V  +P    TRD      +     +FR++D
Sbjct: 140 NLLPTVILVGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD-FREGIAKLGDLRFRVLD 198

Query: 79  TAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEG 138
           +AG+   A   S    T  ++ N     + RS     +I+  A +   D  + + + +  
Sbjct: 199 SAGLEMAATSGSILGRTADMTAN----VLARSQFAIFLIDVRAGLHPMDLEVGKWLRRHA 254

Query: 139 KG-CLIVV 145
            G C I+V
Sbjct: 255 PGICTILV 262


>GSVIVT01008990001 assembled CDS
          Length = 571

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 23/173 (13%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           IAI+GRPNVGKSS+LNA  + +R IV+ I+GTTRD ++   S   G    L+DTAGIR  
Sbjct: 328 IAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVS-IHGIPVTLLDTAGIRE- 385

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGK------ 139
                +  + E + V R+      +DV+ + I A+   T QD ++  RI    K      
Sbjct: 386 -----TDDIVEKIGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESST 440

Query: 140 GCLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKI 192
             ++VVNK D  P+    T ++ E +   K    H    +++ A+ G+ +  +
Sbjct: 441 PVILVVNKIDCAPSAC--TELFMEGNSFSK----H----IFTCAVTGQGISDL 483


>GSVIVT01018924001 assembled CDS
          Length = 320

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 21/153 (13%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           +A++G+PNVGKS++ N ++ +  +IV+    TTR  I    SGP+ Q   L DT G+   
Sbjct: 25  VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMI-LYDTPGV--- 80

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKG----- 140
             +       +++ +     A   +D V ++++  AC   Q  +I E +E EG G     
Sbjct: 81  --IEKKMHKLDSMMMKNVRSATINADCVVVLVD--ACKEPQ--KIDEVLE-EGVGNLKDK 133

Query: 141 --CLIVVNKWDTI-PNKNQQTAMYYEQ--DVRE 168
              L+V+NK D I P +  +   +YE+  DV E
Sbjct: 134 LPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDE 166