Jatropha Genome Database

JcCB0284961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284961.10 + phase: 0 /pseudo/partial
         (189 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033007001 assembled CDS                                       208   1e-54
GSVIVT01028540001 assembled CDS                                        99   2e-21
GSVIVT01034419001 assembled CDS                                        87   5e-18
GSVIVT01003212001 assembled CDS                                        69   2e-12
GSVIVT01030182001 assembled CDS                                        67   4e-12
GSVIVT01024559001 assembled CDS                                        67   4e-12
GSVIVT01014432001 assembled CDS                                        55   2e-08

>GSVIVT01033007001 assembled CDS
          Length = 287

 Score =  208 bits (530), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 138/183 (75%), Gaps = 26/183 (14%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ +K+AE HLP+LE+KEGI I+M DLDG HVW+FKYR+WPNNNSRMYVLENTG+FVN H
Sbjct: 111 VLPKKSAETHLPLLEAKEGILITMYDLDGQHVWNFKYRFWPNNNSRMYVLENTGEFVNVH 170

Query: 85  GLQLGDFIM----------VIQARKASDEDVYANIAMT-AVNDIFLHDYEVNKSSSFYMN 133
           GLQLGD+IM          VI+ARKAS+++++A+++   AV+D+FL D E N+S     N
Sbjct: 171 GLQLGDYIMLYHDGQTQSLVIEARKASEKNLHADLSKNIAVSDLFLQDLEANRS-----N 225

Query: 134 YPMVDNTGLSFIYDTTTIISNDSPLDFLGGSLT--------NYSRIGQMENFGSVENLSL 185
           Y +  +TG SF+Y+TT   SNDSPLDFLGGS+T        NYSR G +E FGSVE+LSL
Sbjct: 226 YFLAMDTGTSFVYETT--FSNDSPLDFLGGSMTNYPGGSVSNYSRFGALEGFGSVESLSL 283

Query: 186 DEF 188
           D+F
Sbjct: 284 DDF 286


>GSVIVT01028540001 assembled CDS
          Length = 564

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 56/70 (80%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ +K AE HLP LE+++GI I M+D+    VW+ +YR+WPNN SRMY+LENTGDFV ++
Sbjct: 440 VLPKKEAETHLPELEARDGITIPMEDIGTSRVWNMRYRFWPNNKSRMYLLENTGDFVRSN 499

Query: 85  GLQLGDFIMV 94
           GLQ GDFI++
Sbjct: 500 GLQEGDFIVL 509


>GSVIVT01034419001 assembled CDS
          Length = 305

 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 4/107 (3%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ +K AEA+LP L +K+G+ + M+D+     W FKYRYWPNN SRMYV+ENTG+FV  H
Sbjct: 178 VLPKKDAEANLPPLVAKDGLVLQMEDMKYSVNWKFKYRYWPNNRSRMYVMENTGNFVKMH 237

Query: 85  GLQLGDFIMVIQARKASDEDVYANIAMTAVN----DIFLHDYEVNKS 127
            LQ GD  +V +   +    V    A+   +    D  +H + V ++
Sbjct: 238 DLQPGDLFVVYKDESSGKYIVRGKKAVKPAHAEDKDGSIHRHRVGEA 284


>GSVIVT01003212001 assembled CDS
          Length = 601

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 11/87 (12%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ +K AEA+ P +   EG+ + + D  G H W F++R+WPNNNSRMYVLE     + + 
Sbjct: 346 VLPKKCAEAYFPAISQPEGLPLKVQDAKG-HEWIFQFRFWPNNNSRMYVLEGVTPCIQSM 404

Query: 85  GLQLGDFI----------MVIQARKAS 101
            LQ GD +          +V+  RKAS
Sbjct: 405 QLQAGDTVTFSRLEPEGKLVMGFRKAS 431


>GSVIVT01030182001 assembled CDS
          Length = 856

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 12/105 (11%)

Query: 21  RLM*IVLQKA-AEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGD 79
           R+  +VL KA AEA+ P +   EG+ + + D+ G   W F++R+WPNNNSRMYVLE    
Sbjct: 318 RIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKE-WVFQFRFWPNNNSRMYVLEGVTP 376

Query: 80  FVNTHGLQLGDFI----------MVIQARKASDEDVYANIAMTAV 114
            + +  LQ GD +          +V+  RKAS+     +  ++A+
Sbjct: 377 CIQSMQLQAGDTVTFSRMDPEGKLVMGFRKASNSVSMQDTQLSAI 421


>GSVIVT01024559001 assembled CDS
          Length = 708

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 12/93 (12%)

Query: 21  RLM*IVLQKA-AEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGD 79
           R+  +VL KA AEA+ P +   EG+ + + D  G   W+F++R+WPNNNSRMYVLE    
Sbjct: 308 RIGRLVLPKACAEAYFPPISQSEGLPLRVQDAKGTE-WTFQFRFWPNNNSRMYVLEGVTP 366

Query: 80  FVNTHGLQLGDFI----------MVIQARKASD 102
            + +  L+ GD +          +VI  RKAS+
Sbjct: 367 CIQSMQLRAGDTVIFSRIDPGNKLVIGCRKASN 399


>GSVIVT01014432001 assembled CDS
          Length = 242

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ +K A+ + P++   EG+ I + D  G   W F YRYW N NS+MYVL+   DFV + 
Sbjct: 131 VIPKKCAQEYFPLISGPEGVTIRILDTRGRE-WVFHYRYWSNANSQMYVLDGLKDFVISM 189

Query: 85  GLQLGDFI-------MVIQARKAS 101
             Q   F        +V+  RKAS
Sbjct: 190 QWQAVTFYRIEPKGQLVLGLRKAS 213