Jatropha Genome Database

JcCB0284451.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.30 - phase: 1 /partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029971001 assembled CDS                                       227   1e-60
GSVIVT01037511001 assembled CDS                                       224   8e-60

>GSVIVT01029971001 assembled CDS
          Length = 669

 Score =  227 bits (578), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/113 (96%), Positives = 111/113 (98%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA
Sbjct: 557 FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 616

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTELASAK 113
           DRINKMLAVLE NILWVNPDCGLKTRKY+EV PALKNMVAAAKLLRTELASAK
Sbjct: 617 DRINKMLAVLETNILWVNPDCGLKTRKYTEVMPALKNMVAAAKLLRTELASAK 669


>GSVIVT01037511001 assembled CDS
          Length = 804

 Score =  224 bits (570), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 107/113 (94%), Positives = 110/113 (97%)

Query: 1   FNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 60
           FNDIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA
Sbjct: 692 FNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 751

Query: 61  DRINKMLAVLEKNILWVNPDCGLKTRKYSEVKPALKNMVAAAKLLRTELASAK 113
           DRINKMLAVLE NILWVNPDCGLKTRKY+EVKPAL NMVAAAKLLRT+LA AK
Sbjct: 752 DRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLARAK 804