Jatropha Genome Database

JcCB0284451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.20 - phase: 0 /partial
         (80 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029969001 assembled CDS                                        84   1e-17
GSVIVT01021904001 assembled CDS                                        72   6e-14
GSVIVT01033035001 assembled CDS                                        70   3e-13
GSVIVT01017799001 assembled CDS                                        68   8e-13
GSVIVT01025192001 assembled CDS                                        67   1e-12
GSVIVT01030843001 assembled CDS                                        55   6e-09
GSVIVT01009189001 assembled CDS                                        55   6e-09

>GSVIVT01029969001 assembled CDS
          Length = 494

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          M KT+LQELCH+K WN P Y T K+GP H+P F  TV+V GLSF +  P RSSK AQ++A
Sbjct: 1  MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 60

Query: 61 AKVAFDHFS 69
          A +A  + +
Sbjct: 61 AGLAIQYLT 69



 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YK  LQE+  ++ + LP Y T K G  H P F  TV + G +F  Q   ++ K A+ +A
Sbjct: 237 VYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQK-AKTKKLAEMNA 295

Query: 61  AKVAFDHF 68
           AK A+ H 
Sbjct: 296 AKAAYTHL 303



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YKT+LQ    ++   LP Y     GP H+ RF+  VT+   ++ S   F + K A++ A
Sbjct: 158 LYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 217

Query: 61  AKVAFDHFSTGG 72
           AK+A    S  G
Sbjct: 218 AKLALMSLSPAG 229


>GSVIVT01021904001 assembled CDS
          Length = 551

 Score = 71.6 bits (174), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  +NLPSY   +EGPDH PRF+ TV  NG +F S S   + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA +  +  G
Sbjct: 61 AEVALNTLANRG 72



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YK  LQE  H+   NLP Y T + GP H P F  TV + G+SF  ++  ++ K AQ +A
Sbjct: 87  VYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMSFTGEA-AKTKKQAQKNA 145

Query: 61  AKVAFDHF 68
           A  A+   
Sbjct: 146 AMTAWSAL 153


>GSVIVT01033035001 assembled CDS
          Length = 481

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          M+K +LQEL  +  +NLPSY   +EGPDH PRF+ +V  NG  F S S   + + A++ A
Sbjct: 1  MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA +  ST G
Sbjct: 61 AEVALNVLSTRG 72



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YK  LQE  H+   NLP Y T + GP H P F  TV + G++F  +S  ++ K A+ +A
Sbjct: 87  VYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGES-AKTKKQAEKNA 145

Query: 61  AKVAFDHF 68
           A  A+   
Sbjct: 146 AIAAWSAL 153


>GSVIVT01017799001 assembled CDS
          Length = 826

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 45/72 (62%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  +NLPSY   +EGPDH PRF+ TV  NG  F S +   + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA +  S  G
Sbjct: 61 AEVALNVLSKNG 72



 Score = 48.5 bits (114), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YK  LQE  H+    LP Y T + GP H P F  TV +  +SF  + P ++ K AQ +A
Sbjct: 87  VYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFFCTVDIAKMSFTGE-PAKTKKQAQKNA 145

Query: 61  AKVAF 65
           A  A+
Sbjct: 146 AMAAW 150


>GSVIVT01025192001 assembled CDS
          Length = 280

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 45/72 (62%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  +NLPSY   +EGPDH PRF+ TV  NG  F S +   + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA +  S  G
Sbjct: 61 AEVALNSLSNRG 72


>GSVIVT01030843001 assembled CDS
          Length = 333

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          M+K +LQE   +    LP Y T  EG  H P+FR TV V+G ++ S + F   K A+ D 
Sbjct: 22 MHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 81

Query: 61 AKVAFDHFS 69
          A++A +  S
Sbjct: 82 ARLALEFIS 90


>GSVIVT01009189001 assembled CDS
          Length = 415

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          ++K++LQE   +     P YDT KEGP H P F+ TV VN + + S   F + K A+  A
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74

Query: 61 AKVAFDHFSTGG 72
          A+VA    +  G
Sbjct: 75 AEVALVELAKSG 86