Jatropha Genome Database

JcCB0284451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.10 + phase: 2 /pseudo/partial
         (149 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021609001 assembled CDS                                        66   8e-12
GSVIVT01021611001 assembled CDS                                        58   2e-09
GSVIVT01012155001 assembled CDS                                        52   7e-08
GSVIVT01034656001 assembled CDS                                        48   1e-06

>GSVIVT01021609001 assembled CDS
          Length = 617

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 33/48 (68%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P ASI +NIFLLGSID  SFERFGIWT          GLHA+YD A
Sbjct: 482 WLPSASIAINIFLLGSIDKASFERFGIWTAVLMVYYFFFGLHASYDTA 529


>GSVIVT01021611001 assembled CDS
          Length = 418

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P ASI +N+F+LGS+D  SF RF +WT          GLHA+YDAA
Sbjct: 350 WLPSASIAINVFILGSMDGSSFARFAVWTGILLVYYLFVGLHASYDAA 397


>GSVIVT01012155001 assembled CDS
          Length = 702

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI  N+FL+GS+++K+F RFG+ T          GLHATYD A
Sbjct: 636 WLPSLSIATNLFLMGSLESKAFIRFGVCTVLMLVYYVFFGLHATYDVA 683


>GSVIVT01034656001 assembled CDS
          Length = 536

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDA 120
           WIP  SI LNIFLLGS+D  S+ RFG ++           +HA++DA
Sbjct: 463 WIPSISIFLNIFLLGSLDRPSYVRFGYFSALAVLVYVLYSVHASFDA 509