Jatropha Genome Database

JcCB0283991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0283991.10 + phase: 0 /pseudo/partial
         (275 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002790001 assembled CDS                                       176   1e-44

>GSVIVT01002790001 assembled CDS
          Length = 174

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 102/132 (77%), Gaps = 10/132 (7%)

Query: 113 DWRQKLETQRGAVLATELKNNANKLA--------RWTAQALLASADLMKLGFVSRVHPRD 164
           D  + L +Q     A E  N+A  L+         ++ Q L+   +  KLG+VSRVHPRD
Sbjct: 11  DLFEALTSQEPLPEAKEDINSAYSLSVEAAYINQNFSQQVLIRDGN--KLGYVSRVHPRD 68

Query: 165 HYNHVILAVLGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRI 224
           H+NHVILAV+GYKPR+FAAQINLNT+NMWGI+KSIVDLCMKLNEGKYVLVKDPSKPQVRI
Sbjct: 69  HFNHVILAVVGYKPREFAAQINLNTTNMWGIIKSIVDLCMKLNEGKYVLVKDPSKPQVRI 128

Query: 225 YEVPADAFENDY 236
           YEVPADAFENDY
Sbjct: 129 YEVPADAFENDY 140