Jatropha Genome Database

JcCB0283941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0283941.10 + phase: 0 /partial
         (208 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014092001 assembled CDS                                       356   5e-99
GSVIVT01021313001 assembled CDS                                       354   1e-98
GSVIVT01013122001 assembled CDS                                       123   6e-29
GSVIVT01007789001 assembled CDS                                       108   2e-24
GSVIVT01020215001 assembled CDS                                       105   1e-23
GSVIVT01021260001 assembled CDS                                       100   6e-22
GSVIVT01020754001 assembled CDS                                        96   2e-20
GSVIVT01011634001 assembled CDS                                        95   3e-20

>GSVIVT01014092001 assembled CDS
          Length = 880

 Score =  356 bits (913), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 173/207 (83%), Positives = 181/207 (87%), Gaps = 1/207 (0%)

Query: 1   GFNATLTEPVDTPGRRG-DQIRXXXXXXXXXXXXXXIALCSDPKTTIVVLSGSDRSVLDE 59
           GFN TLTEPVDTPG RG DQI+               AL +DPKTTIVVLSGSDR+VLD+
Sbjct: 590 GFNVTLTEPVDTPGSRGGDQIKEMDLKLHPELKGPLTALGNDPKTTIVVLSGSDRTVLDD 649

Query: 60  NFGEFDMWLAAEHGMFLRLTKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHYELRE 119
           NFGEFDMWLAAE+GMFLR TKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRS  + RE
Sbjct: 650 NFGEFDMWLAAENGMFLRHTKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSQLQKRE 709

Query: 120 TSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDR 179
           TSLVWNYKYAD EFG+LQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDR
Sbjct: 710 TSLVWNYKYADAEFGKLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDR 769

Query: 180 ILGEIVHSKSMTMPIDYVLCIGHFLGK 206
           ILGEIVH+KSMT PIDYVLC GHFLGK
Sbjct: 770 ILGEIVHNKSMTSPIDYVLCAGHFLGK 796


>GSVIVT01021313001 assembled CDS
          Length = 487

 Score =  354 bits (909), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 164/206 (79%), Positives = 180/206 (87%)

Query: 1   GFNATLTEPVDTPGRRGDQIRXXXXXXXXXXXXXXIALCSDPKTTIVVLSGSDRSVLDEN 60
           GFN+TLTEPVD PGRRG QI+                LC DPKTT+++LSGSDR VLD+N
Sbjct: 200 GFNSTLTEPVDIPGRRGGQIKEMELKLHPDLKEPLKKLCDDPKTTVIILSGSDRGVLDDN 259

Query: 61  FGEFDMWLAAEHGMFLRLTKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHYELRET 120
           F E++MWLAAE+GMFLRLT GEWMTTMP++LNM+WVDSVKHVFEYFTERTPRSH+ELRET
Sbjct: 260 FSEYNMWLAAENGMFLRLTTGEWMTTMPDNLNMDWVDSVKHVFEYFTERTPRSHFELRET 319

Query: 121 SLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRI 180
           SLVWNYKYAD+EFGRLQARDMLQHLWTGPISNASVDVVQG RSVEVRAVGVTKGAAIDRI
Sbjct: 320 SLVWNYKYADIEFGRLQARDMLQHLWTGPISNASVDVVQGGRSVEVRAVGVTKGAAIDRI 379

Query: 181 LGEIVHSKSMTMPIDYVLCIGHFLGK 206
           LGEIVH++ M  PIDYVLCIGHFLGK
Sbjct: 380 LGEIVHNRGMKAPIDYVLCIGHFLGK 405


>GSVIVT01013122001 assembled CDS
          Length = 261

 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 98/166 (59%), Gaps = 7/166 (4%)

Query: 38  LCSDPKTTIVVLSGSDRSVLDENFGEFD-MWLAAEHGMFLRLT-KGEWMTTMPEHLNMEW 95
           LC DPK  + V+SG D+  L E F   + + +AAEHG FLRL+   EW T +P   + +W
Sbjct: 21  LCGDPKNVVFVVSGKDKKTLTEGFSSCEKLGIAAEHGYFLRLSHDAEWETCLP-VTDFDW 79

Query: 96  VDSVKHVFEYFTERTPRSHYELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASV 155
               + V + +TE T  S  E +E++LVWNY+YAD +FG  QA+++L HL +  ++N  V
Sbjct: 80  KQIAEPVMKLYTETTDGSTIETKESALVWNYQYADPDFGSCQAKELLDHLES-VLANEPV 138

Query: 156 DVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTMPIDYVLCIG 201
            V  G   VEV+  GV KG   +R+L   V  +   M  D+VLCIG
Sbjct: 139 SVKSGQHIVEVKPQGVNKGLVAERLL---VTMRQKGMLPDFVLCIG 181


>GSVIVT01007789001 assembled CDS
          Length = 717

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 100/165 (60%), Gaps = 5/165 (3%)

Query: 38  LCSDPKTTIVVLSGSDRSVLDENFGEF-DMWLAAEHGMFLRLTKGEWMTTMPEHLNMEWV 96
           LC+DPK T+ ++SG  ++ L + F +  ++ +AAEHG F+R ++     + P  ++ +W 
Sbjct: 479 LCNDPKNTVFIVSGRGKNSLSDWFAQCQNLGIAAEHGYFIRWSQSSNWESRPLLMDFDWK 538

Query: 97  DSVKHVFEYFTERTPRSHYELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVD 156
                V + +TE T  S+ E +E++LVW+++ AD +FG  QA ++L HL    ++N  V+
Sbjct: 539 RIADPVMQLYTEATDGSYIETKESALVWHHQDADPDFGSCQAMELLDHL-ENVLANEPVE 597

Query: 157 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTMPIDYVLCIG 201
           V +G   VEV+  GV+KG   ++IL  ++   S   P D+V+CIG
Sbjct: 598 VKRGHHIVEVKPQGVSKGQVTEKILSTMI---SDGKPPDFVMCIG 639


>GSVIVT01020215001 assembled CDS
          Length = 643

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 5/165 (3%)

Query: 38  LCSDPKTTIVVLSGSDRSVLDENFGEFD-MWLAAEHGMFLRLTKGEWMTTMPEHLNMEWV 96
           LCSDPK T+ ++SG  RS L E     + + +AAEHG F+R  +     +     +++W 
Sbjct: 405 LCSDPKNTVFIVSGRGRSSLSEWLAPCERLGIAAEHGYFMRWNESTKWESCNLAADLDWK 464

Query: 97  DSVKHVFEYFTERTPRSHYELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVD 156
             V+ V   +TE T  S+ E++E++LVW+++ AD +FG  QA++++ HL    ++N    
Sbjct: 465 KVVEPVMRLYTETTDGSNIEIKESALVWHHQDADPDFGSCQAKELMDHL-ENVLANEPAV 523

Query: 157 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTMPIDYVLCIG 201
           V +G   VEV+  GV+KG   +++L  +V+      P D+V+CIG
Sbjct: 524 VKRGQHIVEVKPQGVSKGLVAEKVLSTMVNDGK---PPDFVMCIG 565


>GSVIVT01021260001 assembled CDS
          Length = 784

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 5/165 (3%)

Query: 38  LCSDPKTTIVVLSGSDRSVLDENFGEFD-MWLAAEHGMFLRLTKGEWMTTMPEHLNMEWV 96
           LCSDP+ T+ V+SG  R  L + F   + + +AAEHG FLR +  E      +  +  W+
Sbjct: 551 LCSDPRNTVFVVSGRGRDSLGKWFSPCNRLGIAAEHGYFLRWSVNEEWEICGQSNDFGWI 610

Query: 97  DSVKHVFEYFTERTPRSHYELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVD 156
              + V + +TE T  S+ E +E++LVW+++ AD  FG  QA++ML HL    ++N  V 
Sbjct: 611 QMAEPVMKLYTEATDGSYIETKESALVWHHQDADPGFGSSQAKEMLDHL-ESVLANEPVA 669

Query: 157 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTMPIDYVLCIG 201
           V  G   VEV+  G++KG   ++I   +          D+VLC+G
Sbjct: 670 VKSGQFIVEVKPQGISKGVVAEKIFTSMAERGRQA---DFVLCVG 711


>GSVIVT01020754001 assembled CDS
          Length = 782

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 38  LCSDPKTTIVVLSGSDRSVLDENFGEF-DMWLAAEHGMFLRLTKGEWMTTMPEHLNMEWV 96
           LC D K T+ ++SG  R  L + F     + LAAEHG FLR ++ +   T  +  +  W 
Sbjct: 548 LCWDKKNTVFIVSGRGRDNLSQWFSPCRKLGLAAEHGYFLRWSQDKEWETCGQSSDFGWK 607

Query: 97  DSVKHVFEYFTERTPRSHYELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVD 156
              + V + +TE T  S  E +E++LVW Y  AD  FG  QA++ML HL    ++N  V 
Sbjct: 608 QIAEPVMKLYTETTDGSSIESKESALVWQYGDADPGFGSSQAKEMLDHL-ESVLANEPVA 666

Query: 157 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTMPIDYVLCIG 201
           V  G   VEV+  GV+KG A ++I   +  +       D++LCIG
Sbjct: 667 VKSGHFIVEVKPQGVSKGLAAEKIFTTMTENGKQA---DFLLCIG 708


>GSVIVT01011634001 assembled CDS
          Length = 702

 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 38  LCSDPKTTIVVLSGSDRSVLDENFGEFD-MWLAAEHGMFLRLTKG--EWMTTMPEHLNME 94
           LC D    ++++S   R  L++ F   + + +AAEHG FLR  KG  EW T +P   +  
Sbjct: 523 LCRDENNMVLIVSARSRKKLEDWFSPCENLGIAAEHGYFLR-PKGDVEWETCVPVA-DCS 580

Query: 95  WVDSVKHVFEYFTERTPRSHYELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNAS 154
           W    + V + +TE T  S  E +ET+L W Y+ AD +FG  QA+++L HL    ++N  
Sbjct: 581 WKQIAEPVMKLYTETTDGSTIEDKETALAWCYEDADPDFGSCQAKELLDHL-ESVLANEP 639

Query: 155 VDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTMPIDYVLCIG 201
           V V  G   VEV+  GV+KG    R+L  +   +   M  D+VLCIG
Sbjct: 640 VTVKSGQSLVEVKPQGVSKGIVAKRLLSTM---QERGMLPDFVLCIG 683