Jatropha Genome Database

JcCB0283351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0283351.10 + phase: 1 /pseudo/partial/short
         (49 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037440001 assembled CDS                                        69   5e-13
GSVIVT01019977001 assembled CDS                                        64   2e-11

>GSVIVT01037440001 assembled CDS
          Length = 553

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/38 (76%), Positives = 35/38 (92%)

Query: 2   EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQTA 39
           E+GVY+WVAVNYALG+LG +P+ETTGIVELGG S+Q A
Sbjct: 205 EEGVYSWVAVNYALGSLGSEPQETTGIVELGGASMQIA 242


>GSVIVT01019977001 assembled CDS
          Length = 373

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 2  EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQ 37
          ++G+Y WV  N+ALG+LGGDPRETTGI+ELGG S Q
Sbjct: 44 DEGIYAWVVANHALGSLGGDPRETTGIIELGGASAQ 79